Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002769-TA|BGIBMGA002769-PA|IPR007822|Lanthionine
synthetase C-like, IPR008928|Six-hairpin glycosidase
(404 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z34533-8|CAA84297.2| 616|Caenorhabditis elegans Hypothetical pr... 36 0.051
AY552607-1|AAS89254.1| 616|Caenorhabditis elegans heparan sulfa... 36 0.051
AC024812-8|AAF59557.4| 912|Caenorhabditis elegans Hypothetical ... 30 2.5
AL021480-5|CAJ21557.1| 432|Caenorhabditis elegans Hypothetical ... 29 4.5
AL021480-4|CAA16329.2| 431|Caenorhabditis elegans Hypothetical ... 29 4.5
Z81109-5|CAB03251.1| 588|Caenorhabditis elegans Hypothetical pr... 29 5.9
Z77659-1|CAB01164.1| 401|Caenorhabditis elegans Hypothetical pr... 29 5.9
Z77667-7|CAB01238.2| 534|Caenorhabditis elegans Hypothetical pr... 29 7.8
>Z34533-8|CAA84297.2| 616|Caenorhabditis elegans Hypothetical
protein B0285.5 protein.
Length = 616
Score = 35.9 bits (79), Expect = 0.051
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Query: 225 LTVPGYISHNKSA-AHDIKTTIDYMVFLQTDEGNWPACMEERTMKEHKLV-----HWCHG 278
LTV I+ + +H D++V Q D G W + ER++ E KLV H
Sbjct: 379 LTVKQKITQRREQHSHAFYAAADWLVKNQNDRGGWSVPV-ERSIAERKLVLPPGWHSAMA 437
Query: 279 APGVVYLMAKAYLVYQEQKYLEACIKAAEL 308
+ ++ +A+ + ++KYL++ KA +L
Sbjct: 438 QGHGISVLTRAFKHFNDEKYLKSAAKALKL 467
>AY552607-1|AAS89254.1| 616|Caenorhabditis elegans heparan sulfate
C5-glucuronyl epimeraseprotein.
Length = 616
Score = 35.9 bits (79), Expect = 0.051
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Query: 225 LTVPGYISHNKSA-AHDIKTTIDYMVFLQTDEGNWPACMEERTMKEHKLV-----HWCHG 278
LTV I+ + +H D++V Q D G W + ER++ E KLV H
Sbjct: 379 LTVKQKITQRREQHSHAFYAAADWLVKNQNDRGGWSVPV-ERSIAERKLVLPPGWHSAMA 437
Query: 279 APGVVYLMAKAYLVYQEQKYLEACIKAAEL 308
+ ++ +A+ + ++KYL++ KA +L
Sbjct: 438 QGHGISVLTRAFKHFNDEKYLKSAAKALKL 467
>AC024812-8|AAF59557.4| 912|Caenorhabditis elegans Hypothetical
protein Y54E10BR.1 protein.
Length = 912
Score = 30.3 bits (65), Expect = 2.5
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 201 LMYHYYNTEYLGAAHGLSFILQMLLTVPGYISHNKSAAHDIKTTIDYMVFL 251
+ YH Y+ + LGAA SF+ + L V HN ++ ++ + + +F+
Sbjct: 406 VFYHRYDRQMLGAAVSCSFVAWIALVVS--FLHNSTSKENLSLLVPHHLFI 454
>AL021480-5|CAJ21557.1| 432|Caenorhabditis elegans Hypothetical
protein Y39E4A.3b protein.
Length = 432
Score = 29.5 bits (63), Expect = 4.5
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 69 RLSENKSAYLAKALEYLSPALEVSAGDKTSFLLGDAGTYALSTVLYKEMGDGSFKE--SL 126
RLSE S YL + LE+ D T L T A+ V+ K D +F E SL
Sbjct: 29 RLSEYSSKYLGHRKAAFTEKLEIVNADDTPALPIYRVTNAVGDVIDKSQ-DPNFDEQTSL 87
Query: 127 KQYQSLFKLYLNPKFL 142
K Y+++ +L + + L
Sbjct: 88 KMYKTMTQLNIMDRIL 103
>AL021480-4|CAA16329.2| 431|Caenorhabditis elegans Hypothetical
protein Y39E4A.3a protein.
Length = 431
Score = 29.5 bits (63), Expect = 4.5
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 69 RLSENKSAYLAKALEYLSPALEVSAGDKTSFLLGDAGTYALSTVLYKEMGDGSFKE--SL 126
RLSE S YL + LE+ D T L T A+ V+ K D +F E SL
Sbjct: 28 RLSEYSSKYLGHRKAAFTEKLEIVNADDTPALPIYRVTNAVGDVIDKSQ-DPNFDEQTSL 86
Query: 127 KQYQSLFKLYLNPKFL 142
K Y+++ +L + + L
Sbjct: 87 KMYKTMTQLNIMDRIL 102
>Z81109-5|CAB03251.1| 588|Caenorhabditis elegans Hypothetical
protein R10D12.8 protein.
Length = 588
Score = 29.1 bits (62), Expect = 5.9
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 163 LTRELQTPILSPDEWFQLCNVIVDSGREYSSKFKSPCPLMYHYYNTEYLGAAHGLSF 219
L + +T +S DEW+ LC+++ E++ + L H + G GL F
Sbjct: 208 LLNDKKTSSMSSDEWWMLCDLLGAYYHEWNFTDEKLSKLNLHATKLGFYGFMEGLGF 264
>Z77659-1|CAB01164.1| 401|Caenorhabditis elegans Hypothetical
protein F23B12.1 protein.
Length = 401
Score = 29.1 bits (62), Expect = 5.9
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Query: 267 MKEHKLVHWCHGAPGVV--YLMAKAYLVYQEQKYLEACIKAAELIWKK--GLLFKGP-GI 321
++++K+ +W H + + + ++ E + +E C +A E WK L + P I
Sbjct: 69 VQKNKVQNWLHSVIERLKWWSPGRCQQLFVENELIELCYRAREQFWKNKVKLDIEAPVKI 128
Query: 322 CHGVSGNGYVFLLLYRLT---DEEKYLY 346
C + G + L+ L +E KYL+
Sbjct: 129 CGDIHGQFEDLMALFELNGWPEEHKYLF 156
>Z77667-7|CAB01238.2| 534|Caenorhabditis elegans Hypothetical
protein M04B2.5 protein.
Length = 534
Score = 28.7 bits (61), Expect = 7.8
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 29 NEYLENITKRLPATRSKVDGGLYVGVTG 56
NEYL N T R AT K +G +Y G G
Sbjct: 475 NEYLNNFTIRSIATFMKANGDVYGGAFG 502
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.321 0.139 0.425
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,211,839
Number of Sequences: 27539
Number of extensions: 437680
Number of successful extensions: 851
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 849
Number of HSP's gapped (non-prelim): 8
length of query: 404
length of database: 12,573,161
effective HSP length: 83
effective length of query: 321
effective length of database: 10,287,424
effective search space: 3302263104
effective search space used: 3302263104
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)
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