GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002768-TA|BGIBMGA002768-PA|undefined
         (325 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    27   2.7  
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces...    27   4.8  
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar...    26   6.3  
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo...    26   8.4  

>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 34   QNIPEIPITVKSSPIELPTPNLITHAIQLHSYARR-LSAILEQNENTVFDSARFD 87
            +N+P +   + S+    P   L   A++L SYAR+ L+    QN    F  A FD
Sbjct: 1546 RNLPALRYFMDSTKFPQPPERLEYTALRLRSYARKTLTNSASQNALFSFLKANFD 1600


>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 403

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 211 QHFYENRVVRYHARLKKRSQDLREQCEAMSVRDITPQLKLEEVPELHFPAALDGAFTPSL 270
           QH    ++++Y         DL++ C    ++    +L L+  P+ +   + D AF   +
Sbjct: 99  QHLLVQKIIKYKNHQYYEILDLKKTCTDTEIKKSYKKLALQLHPDKNHAPSADEAF-KMV 157

Query: 271 EPGFQML 277
              FQ+L
Sbjct: 158 SKAFQVL 164


>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
           Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 152 GIPTCTNTALDGVADLLDHYMTNMCKLLRTVVDKEASGLKSGFADAVSKVFSDLK 206
           G+  C  T    + D+LD   TN+ ++   V+D+    L  GF   + K+   ++
Sbjct: 245 GVEICIATP-GRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIR 298


>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 509

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 5   KLWG-EMEEEATDETLLQNVNFNPIIELGMQNIPEIPIT 42
           K+WG EM+E   D  L +   F   I   ++NIPE  +T
Sbjct: 467 KIWGNEMQEIHNDRVLYREGIFGSHILEMLENIPEQVLT 505


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.133    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,405,761
Number of Sequences: 5004
Number of extensions: 54268
Number of successful extensions: 119
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 119
Number of HSP's gapped (non-prelim): 4
length of query: 325
length of database: 2,362,478
effective HSP length: 73
effective length of query: 252
effective length of database: 1,997,186
effective search space: 503290872
effective search space used: 503290872
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)