Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002768-TA|BGIBMGA002768-PA|undefined
(325 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0694 - 24347642-24348246,24349915-24349993,24350473-243506... 32 0.54
10_06_0105 - 10790092-10790323,10791092-10791234,10791322-107914... 31 0.95
07_03_0959 - 22885750-22886001,22886073-22886195,22886343-228864... 31 0.95
03_05_0325 + 23135816-23135894,23136161-23136333,23136440-231366... 29 5.1
04_03_0851 + 20285996-20286128,20286217-20286290,20286376-202864... 29 6.7
10_08_0249 + 16172811-16172987,16174048-16174299,16174426-161745... 28 8.9
09_02_0022 + 3065644-3065953,3066048-3067162,3067261-3067437,306... 28 8.9
07_03_0960 - 22902279-22902530,22902604-22902726,22902855-229029... 28 8.9
>01_05_0694 -
24347642-24348246,24349915-24349993,24350473-24350607,
24351486-24351578,24351801-24351926,24352285-24352332,
24352552-24352653,24353234-24353317,24353754-24353825,
24354136-24354292,24354520-24354563,24354806-24354918,
24355252-24355368,24356330-24356399
Length = 614
Score = 32.3 bits (70), Expect = 0.54
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 126 NIILPFTPESHRRALRQ-----CAAIAIGQVGIPTCTNTALDGVADLLDHYMTNMCKLLR 180
N++ PE++R L Q C A+G + C + L G+ + + LL
Sbjct: 215 NLLHEVFPEANRTVLEQLSKVDCIVYAMGSLFTSVCPSLVLRGIGETIASRSIPKVLLLN 274
Query: 181 TVVDKEASGL-KSGFADAVS 199
D+E +GL SGF A++
Sbjct: 275 GSHDRETTGLPASGFVTAIT 294
>10_06_0105 - 10790092-10790323,10791092-10791234,10791322-10791429,
10791796-10791903,10793133-10797686,10798347-10798461,
10799597-10799724,10799843-10800043,10800158-10800227,
10801233-10801314,10801433-10801556,10801761-10801778
Length = 1960
Score = 31.5 bits (68), Expect = 0.95
Identities = 23/99 (23%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
Query: 158 NTALDGVADLLDHYMTNMCK-LLRTVVDKEASGLKSGFADAVSKVFSDLKVGNLQHFYEN 216
NT + V+ LL M N+C ++ + D SGL + + + V F++
Sbjct: 984 NTDMQTVSALLQEQMNNVCNGIISSSKDIGISGLDEASLLHELQRRNYIAVMASLEFFQK 1043
Query: 217 RVVRYHARLKKRSQDLREQCEAMSVRDITPQLKLEEVPE 255
+ + RL++ + E CEA+ R +L+L ++ +
Sbjct: 1044 QSCQEVVRLRQEKEAAEEMCEALRSRQDKSELELLDMKQ 1082
>07_03_0959 -
22885750-22886001,22886073-22886195,22886343-22886429,
22886504-22886555,22886701-22886825,22887002-22887213,
22887317-22887518,22887928-22888032,22889643-22889704,
22889998-22890187,22890260-22890355,22890442-22890544,
22891448-22891551,22893284-22893370,22894033-22894118,
22894397-22894489,22895615-22895777,22895899-22896011,
22896113-22896235,22897393-22897444,22897843-22897886,
22897975-22898048,22898133-22898224,22899374-22899441,
22900817-22900892,22900952-22901215
Length = 1015
Score = 31.5 bits (68), Expect = 0.95
Identities = 21/94 (22%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Query: 170 HYMTNMCKLLRTVVDKE---ASGLKSGFA-DAVSKVFSDLKVGNLQHFYENRVVRYHARL 225
HY+ N+ ++ ++ AS + S F+ DA+ + +DL N++ F+E++ L
Sbjct: 435 HYVVNISSNMQIFPPEDWLIASSVPSKFSPDAIQNILNDLTPDNVRIFWESKKFEGQTNL 494
Query: 226 KKRSQDLREQCEAMSVRDITPQLKLEEVPELHFP 259
+ EA++ I + + + +LH P
Sbjct: 495 TEPWYGTSYSVEAVTPSIIQKWVNMAPMEDLHIP 528
>03_05_0325 +
23135816-23135894,23136161-23136333,23136440-23136613,
23136881-23137004,23137090-23137190,23137337-23137423,
23137801-23137896,23138209-23138329,23138475-23138603,
23139458-23139549,23139660-23139771,23140189-23140541,
23140670-23140899,23141179-23141278,23143357-23143411,
23143548-23145496,23145587-23145745,23146514-23146685,
23146758-23147056,23147246-23147521
Length = 1626
Score = 29.1 bits (62), Expect = 5.1
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 181 TVVDKEASGLKSGFADAVSKVFSDLKVGNLQHFYENRVVRYHARLKKRSQDLREQCEAMS 240
T +G++ + V KV ++ G+ ++EN R A K++ LR QC ++
Sbjct: 19 TAYTNAKAGMEGVDKEKVQKVIYEMSKGS--KYFENEQ-RKEAITKQKIDHLRAQCAKLT 75
Query: 241 VRDITPQLKLEEVPELHFPAALD 263
DI+ K+ E L A+ D
Sbjct: 76 DNDISHFQKVAEHKILELEASRD 98
>04_03_0851 +
20285996-20286128,20286217-20286290,20286376-20286494,
20287169-20287252,20287974-20288079
Length = 171
Score = 28.7 bits (61), Expect = 6.7
Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 182 VVDKE-ASGLKSG--FADAVSK-VFSDLKVGNLQHFYENRVVRYHARLKKRSQDLREQCE 237
V+ KE AS + G D + K +F L++ +++ F ++ +V Y +KR +++RE+ +
Sbjct: 19 VIPKEIASHVLDGVEICDGILKNLFLCLQINDIEPFCQDEIVLYRQCAEKRDKEIRERLQ 78
Query: 238 AMSVRDITPQLKLEEVPE 255
+ + + LEE E
Sbjct: 79 DSEYK-LGFSMPLEEAKE 95
>10_08_0249 +
16172811-16172987,16174048-16174299,16174426-16174505,
16174616-16174701,16174799-16174904,16174987-16175143,
16175220-16175315,16175797-16175845,16175946-16176205,
16176327-16176499,16176692-16176812,16176923-16176975,
16177088-16177217,16177371-16177516,16177887-16178075,
16178317-16178549,16178784-16178932,16179042-16179104
Length = 839
Score = 28.3 bits (60), Expect = 8.9
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Query: 154 PTCTNTALDGVADLLDHYMTNMCKLLRTVVDK-EASGLKSGFADAVSKVFSDLKVGNLQH 212
P C+ TA DG + +L T++ K VV++ A K F A+ V L L
Sbjct: 550 PYCSTTAFDGASSVLQEVYTSL-KAAEIVVEQLHAESGKGQFEIALKYVLCTLAADKL-- 606
Query: 213 FYENRVVRYHAR 224
Y +++ AR
Sbjct: 607 IYAREIIKSVAR 618
>09_02_0022 +
3065644-3065953,3066048-3067162,3067261-3067437,
3067535-3067648,3068614-3068718,3068930-3069064,
3069148-3069203,3069277-3069382,3069515-3069631,
3069705-3069831,3069915-3070141,3070164-3070727
Length = 1050
Score = 28.3 bits (60), Expect = 8.9
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 22 NVNFNPIIELGMQNIPEIPITVKSSPIELPTPNLITHAIQLHSYARRLSAILEQNEN 78
N N++P L Q +P + + ++LPT + A Q + A +EQ +N
Sbjct: 883 NTNYSPSPALSTQAVPPAKVVQNGNSLKLPTLPKLNPAAQRSNPTESNKAEVEQADN 939
>07_03_0960 -
22902279-22902530,22902604-22902726,22902855-22902941,
22903017-22903068,22903197-22903321,22903476-22903684,
22903990-22904191,22906205-22906309,22907264-22907325,
22907625-22907814,22907887-22907982,22908069-22908171,
22909117-22909220,22910239-22910325,22911238-22911323,
22911410-22911502,22912586-22912673,22912786-22912898,
22912989-22913111,22914473-22914524,22915185-22915286,
22915539-22915582,22915667-22915740,22915825-22915916,
22916566-22916633,22918572-22918647,22918767-22918952
Length = 997
Score = 28.3 bits (60), Expect = 8.9
Identities = 21/94 (22%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 170 HYMTNMCKLLRTVVDKE---ASGLKSGFA-DAVSKVFSDLKVGNLQHFYENRVVRYHARL 225
HY+ N+ ++ ++ AS + S F+ DA+ + ++L N++ F+E++ L
Sbjct: 418 HYVANISSNMQIYPPEDWLIASSVPSKFSPDAIQGILNELTPDNVRIFWESKKFEGQTNL 477
Query: 226 KKRSQDLREQCEAMSVRDITPQLKLEEVPELHFP 259
+ EA+ I ++ V +LH P
Sbjct: 478 TEPWYGTSYSVEAVPPSIIQKWVEKAPVEDLHMP 511
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.133 0.386
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,634,096
Number of Sequences: 37544
Number of extensions: 326043
Number of successful extensions: 666
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 664
Number of HSP's gapped (non-prelim): 9
length of query: 325
length of database: 14,793,348
effective HSP length: 82
effective length of query: 243
effective length of database: 11,714,740
effective search space: 2846681820
effective search space used: 2846681820
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)
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