GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002767-TA|BGIBMGA002767-PA|IPR000276|Rhodopsin-like GPCR
superfamily, IPR001658|Gonadotrophin releasing hormone receptor
         (405 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20H4.03c |tfs1||transcription elongation factor TFIIS |Schiz...    27   3.6  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    27   4.7  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    26   8.3  

>SPAC20H4.03c |tfs1||transcription elongation factor TFIIS
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 293

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 354 ESTEISAATLSRARHSNGSDHNGRRDSSYAN---QNGPQKHWNTINN 397
           ++ EI A  L+RA    GS++  R  S Y N   +N P+   + + N
Sbjct: 159 KAKEIDAQVLARAAGKTGSEYRNRMRSLYMNLKDKNNPKLRASVLRN 205


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 7/44 (15%)

Query: 353  GESTEISAATLSRARHSNGS-------DHNGRRDSSYANQNGPQ 389
            GES       +SRA  SNGS       D +GRR + YA+   P+
Sbjct: 1528 GESNSRQNNAISRAGRSNGSNRGNDSRDADGRRSTHYASNKRPR 1571


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 12/36 (33%), Positives = 16/36 (44%)

Query: 284 LWYWIDKESIKNLDPALQKAMWLFSCTNSCANPIVY 319
           LW W DK           +   ++S   S ANPI+Y
Sbjct: 262 LWTWNDKTLTNTYTYTGHRGKHIWSLVVSSANPIIY 297


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.325    0.136    0.440 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,799,958
Number of Sequences: 5004
Number of extensions: 69019
Number of successful extensions: 189
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 187
Number of HSP's gapped (non-prelim): 3
length of query: 405
length of database: 2,362,478
effective HSP length: 74
effective length of query: 331
effective length of database: 1,992,182
effective search space: 659412242
effective search space used: 659412242
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 55 (26.2 bits)