GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002767-TA|BGIBMGA002767-PA|IPR000276|Rhodopsin-like GPCR
superfamily, IPR001658|Gonadotrophin releasing hormone receptor
         (405 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0347 - 2730242-2730425,2730541-2730692,2730782-2730940,273...    29   6.7  
07_03_0738 + 21093024-21093454,21093540-21093964,21094076-210942...    29   8.8  

>03_01_0347 -
           2730242-2730425,2730541-2730692,2730782-2730940,
           2734144-2734618,2734713-2734775,2734870-2735078
          Length = 413

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 281 CYCLWYWIDKESIKNLDPALQKAMWLFSCTNSCANPIVYGVFNRNR-WNWRAG 332
           C+ +WY +   S+K     L    W+  CT       V+  F +++  +WR G
Sbjct: 241 CWSIWYILQASSLKRYPAQLSLTAWM--CTVGGIQSAVFTAFMQHKPEDWRIG 291


>07_03_0738 +
           21093024-21093454,21093540-21093964,21094076-21094201,
           21094277-21094398,21094496-21094706,21095038-21095275,
           21095351-21095498,21095640-21095975
          Length = 678

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 286 YWIDKESIKNLDPALQKAMWLFSCTNSCANPIVYGVFNR 324
           + + +E++ NL P  Q A +    +NSC+ P    V+NR
Sbjct: 619 FMLSRENM-NLQPPAQPAFFFDGDSNSCSQPFEQPVYNR 656


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.325    0.136    0.440 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,366,958
Number of Sequences: 37544
Number of extensions: 421303
Number of successful extensions: 1098
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1098
Number of HSP's gapped (non-prelim): 2
length of query: 405
length of database: 14,793,348
effective HSP length: 84
effective length of query: 321
effective length of database: 11,639,652
effective search space: 3736328292
effective search space used: 3736328292
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 61 (28.7 bits)