GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002766-TA|BGIBMGA002766-PA|IPR012617|TRAUB
         (574 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    33   0.004
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          28   0.20 
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    27   0.47 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    25   1.1  
AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory recept...    24   3.3  
AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory recept...    24   3.3  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    23   5.8  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    23   5.8  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           23   5.8  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    23   5.8  
AJ845188-1|CAH60165.1|  517|Tribolium castaneum putative esteras...    23   7.6  

>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 33.5 bits (73), Expect = 0.004
 Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 5/96 (5%)

Query: 260 TMAGMKILNFSYGVKHLYITLLTLQNILFN-NYPETKTLTTNKRSAAPSKVEQKQESDE- 317
           T A + +L   +G K  Y  +   + +    N PE++     K   A  + +QKQ + + 
Sbjct: 77  TRAQLDVLEALFG-KTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQKQHNQQQ 135

Query: 318 --EIPSDTEDEEIPSDTEEDESPVSKNTNESKKSNA 351
             E  S  +++  P  T+   +PVS N N S  S+A
Sbjct: 136 SVEKSSKLKNKSAPILTKTSPTPVSINNNTSTSSSA 171


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 27.9 bits (59), Expect = 0.20
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 306 PSKVEQKQESDEEIPSDTEDEEIPSDTEEDESP 338
           P  V+++ ESDEE P+ +   +  S   EDE P
Sbjct: 77  PENVKKEDESDEEKPTTSFKLKDSSSDSEDERP 109


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 26.6 bits (56), Expect = 0.47
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 3/73 (4%)

Query: 387 NEKTRLATASNIKNAPTNTVLQQISYILSDRDKLIRRTQLKRTEYDIVGYSKAVNNDNDS 446
           N + RL   + +   P N        ++SD D   +  + KR + D+ G  K+  N  D 
Sbjct: 137 NARRRLKKENKMTWEPKNKTDDDDDALVSDSDDREKDEEDKRDDTDMHGRIKSERNGKDL 196

Query: 447 EKVTKN---RKDD 456
           +    N   RKDD
Sbjct: 197 DDDDMNDDDRKDD 209


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 25.4 bits (53), Expect = 1.1
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 8/72 (11%)

Query: 295 KTLTTNKRSAAPSKVEQKQESDEE--------IPSDTEDEEIPSDTEEDESPVSKNTNES 346
           K+ T++K   A  +V  K+E DEE        +    E E+   D     S  +K  +E 
Sbjct: 850 KSPTSDKAQEADGEVVVKKEVDEEERLENHTSVKIKREAEDRDEDERSFHSNGAKEEDED 909

Query: 347 KKSNAPANLPKK 358
           K S +P   P++
Sbjct: 910 KPSVSPLTSPRQ 921


>AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory receptor
           candidate 56 protein.
          Length = 358

 Score = 23.8 bits (49), Expect = 3.3
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 277 YITLLTLQNILFNNYPETKTLTTNKRSAA----PSKVEQKQESDEEIP 320
           Y+ +L ++  L N Y ET    TN+ S       S V++K +   ++P
Sbjct: 201 YLNILRVRYQLLNEYLETLVQETNRTSVEGWTDVSNVKRKSKEISKLP 248


>AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory receptor
           candidate 21 protein.
          Length = 386

 Score = 23.8 bits (49), Expect = 3.3
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 277 YITLLTLQNILFNNYPETKTLTTNKRSAA----PSKVEQKQESDEEIP 320
           Y+ +L ++  L N Y ET    TN+ S       S V++K +   ++P
Sbjct: 201 YLNILRVRYQLLNEYLETLVQETNRTSVEGWTDVSNVKRKSKEISKLP 248


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 23.0 bits (47), Expect = 5.8
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 484 DISDPVQLSRQWIALQQMRSKMKRKVDTKATK 515
           +I++ ++L+ + I +     +MK K DTK T+
Sbjct: 215 EIAESLRLTERQIKIWFQNRRMKAKKDTKFTE 246


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 23.0 bits (47), Expect = 5.8
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 484 DISDPVQLSRQWIALQQMRSKMKRKVDTKATK 515
           +I++ ++L+ + I +     +MK K DTK T+
Sbjct: 215 EIAESLRLTERQIKIWFQNRRMKAKKDTKFTE 246


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 23.0 bits (47), Expect = 5.8
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 484 DISDPVQLSRQWIALQQMRSKMKRKVDTKATK 515
           +I++ ++L+ + I +     +MK K DTK T+
Sbjct: 215 EIAESLRLTERQIKIWFQNRRMKAKKDTKFTE 246


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 5.8
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 437 SKAVNNDNDSEKVTKNRKDDDEYIPEIFDDN 467
           S +V+N N SEK +  +  DD +     D N
Sbjct: 252 SHSVDNSNSSEKKSSIQHGDDAHKTHHLDKN 282


>AJ845188-1|CAH60165.1|  517|Tribolium castaneum putative esterase
           protein.
          Length = 517

 Score = 22.6 bits (46), Expect = 7.6
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 240 NEFVEESDPKGLVKQGSSVSTMAGMKILNFSYG 272
           N+F E   P  + K+GS  S     KI +F YG
Sbjct: 328 NDFEEFVHPT-VAKRGSITSKNVAKKIRDFYYG 359


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.310    0.128    0.354 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,664
Number of Sequences: 317
Number of extensions: 4988
Number of successful extensions: 18
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 12
length of query: 574
length of database: 114,650
effective HSP length: 60
effective length of query: 514
effective length of database: 95,630
effective search space: 49153820
effective search space used: 49153820
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 46 (22.6 bits)