GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002766-TA|BGIBMGA002766-PA|IPR012617|TRAUB
         (574 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              28   0.24 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             26   0.97 
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   6.9  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   6.9  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   9.1  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 27.9 bits (59), Expect = 0.24
 Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 1/78 (1%)

Query: 295 KTLTTNKRSAAPSKVEQKQESDEEIPSDTEDEEIPSDTEEDESPVSKNTNESKKSNAPA- 353
           +TL  N+ S   SK+    +S        +D  IP   + D    S    E  K N    
Sbjct: 162 RTLHMNRTSLKTSKIVSYPKSRSRKKGGLKDNLIPDKNDPDSKECSNQEYEIMKDNLLLY 221

Query: 354 NLPKKRKLDDYEKEISIS 371
           N  +    D++ KE  +S
Sbjct: 222 NHARLMSQDNHSKEYLVS 239


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.8 bits (54), Expect = 0.97
 Identities = 18/82 (21%), Positives = 40/82 (48%), Gaps = 5/82 (6%)

Query: 294 TKTLTTNKRSAAPSKVEQKQESDEEIPSDTEDEEIPSDTEED---ESPVSKNTNESKKSN 350
           T  +TT   +    ++ +++++D E   D +D+E  ++ EED   +S   K     + ++
Sbjct: 251 TAAMTTGTTTIPTRRLRKRRQNDGEGADDRDDDE-ENEEEEDGRGQSEAEKRLKLDEDAD 309

Query: 351 APANLPKKRKLDDYEKEISISH 372
              + P +R+ D   +E   S+
Sbjct: 310 GAVS-PLRREKDRGSREYPTSN 330


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.0 bits (47), Expect = 6.9
 Identities = 9/43 (20%), Positives = 20/43 (46%)

Query: 300 NKRSAAPSKVEQKQESDEEIPSDTEDEEIPSDTEEDESPVSKN 342
           N+          ++++DEE     +++ IP +   DE  + +N
Sbjct: 126 NRNDRRKKTFAAREDNDEEEAQKPKEQYIPPELPNDEKSLFEN 168


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.0 bits (47), Expect = 6.9
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 258 VSTMAGMKILNFSYGVKHLYITLLTLQNILFNN-YPETKTLT 298
           + ++AG+KI   +   K LY  LL+  N L       T+TLT
Sbjct: 19  IYSVAGLKIFEANPDTKRLYDDLLSNYNRLIRPVMNNTETLT 60


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.6 bits (46), Expect = 9.1
 Identities = 9/13 (69%), Positives = 11/13 (84%)

Query: 235 ELKNSNEFVEESD 247
           ELK  +EFVE+SD
Sbjct: 516 ELKQCDEFVEDSD 528


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.310    0.128    0.354 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,666
Number of Sequences: 429
Number of extensions: 6814
Number of successful extensions: 19
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 5
length of query: 574
length of database: 140,377
effective HSP length: 61
effective length of query: 513
effective length of database: 114,208
effective search space: 58588704
effective search space used: 58588704
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 46 (22.6 bits)