Silkworm BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002765-TA|BGIBMGA002765-PA|undefined
         (72 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC014140-1|AAH14140.1|  721|Homo sapiens Bardet-Biedl syndrome 2...    56   2e-08
AK027635-1|BAB55252.1|  721|Homo sapiens protein ( Homo sapiens ...    56   2e-08
AF342736-1|AAK28552.1|  721|Homo sapiens BBS2 protein.                 56   2e-08

>BC014140-1|AAH14140.1|  721|Homo sapiens Bardet-Biedl syndrome 2
           protein.
          Length = 721

 Score = 55.6 bits (128), Expect = 2e-08
 Identities = 25/68 (36%), Positives = 42/68 (61%)

Query: 2   LNEELIAACHVRRATQEHAVASLKTLHTILQQAARLRVGKYSKAVVSASRNAVKENNVEA 61
           LN +L+    +R       + +LK ++  +Q+A RLRVGK    V++A R+A++ NN+  
Sbjct: 650 LNRDLLNGYKIRCNNHTELLGNLKAVNQAIQRAGRLRVGKPKNQVITACRDAIRSNNINT 709

Query: 62  LIKIIQVG 69
           L KI++VG
Sbjct: 710 LFKIMRVG 717


>AK027635-1|BAB55252.1|  721|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14729 fis, clone NT2RP3001896. ).
          Length = 721

 Score = 55.6 bits (128), Expect = 2e-08
 Identities = 25/68 (36%), Positives = 42/68 (61%)

Query: 2   LNEELIAACHVRRATQEHAVASLKTLHTILQQAARLRVGKYSKAVVSASRNAVKENNVEA 61
           LN +L+    +R       + +LK ++  +Q+A RLRVGK    V++A R+A++ NN+  
Sbjct: 650 LNRDLLNGYKIRCNNHTELLGNLKAVNQAIQRAGRLRVGKPKNQVITACRDAIRSNNINT 709

Query: 62  LIKIIQVG 69
           L KI++VG
Sbjct: 710 LFKIMRVG 717


>AF342736-1|AAK28552.1|  721|Homo sapiens BBS2 protein.
          Length = 721

 Score = 55.6 bits (128), Expect = 2e-08
 Identities = 25/68 (36%), Positives = 42/68 (61%)

Query: 2   LNEELIAACHVRRATQEHAVASLKTLHTILQQAARLRVGKYSKAVVSASRNAVKENNVEA 61
           LN +L+    +R       + +LK ++  +Q+A RLRVGK    V++A R+A++ NN+  
Sbjct: 650 LNRDLLNGYKIRCNNHTELLGNLKAVNQAIQRAGRLRVGKPKNQVITACRDAIRSNNINT 709

Query: 62  LIKIIQVG 69
           L KI++VG
Sbjct: 710 LFKIMRVG 717


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.317    0.126    0.322 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,819,315
Number of Sequences: 224733
Number of extensions: 155547
Number of successful extensions: 361
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 358
Number of HSP's gapped (non-prelim): 3
length of query: 72
length of database: 73,234,838
effective HSP length: 51
effective length of query: 21
effective length of database: 61,773,455
effective search space: 1297242555
effective search space used: 1297242555
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)