GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002765-TA|BGIBMGA002765-PA|undefined
         (72 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    25   1.2  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       25   1.6  
SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc...    23   3.7  
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    23   4.9  
SPAC23G3.11 |rpn6||19S proteasome regulatory subunit Rpn6|Schizo...    23   6.5  
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc...    23   6.5  
SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate transa...    23   6.5  
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    22   8.6  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    22   8.6  

>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 25.0 bits (52), Expect = 1.2
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 2/61 (3%)

Query: 4   EELIAACHVRRATQ--EHAVASLKTLHTILQQAARLRVGKYSKAVVSASRNAVKENNVEA 61
           EEL+ A  + +  +  E  V  +KTLH       R  +    +    A +N +   NV  
Sbjct: 870 EELLEAEKIEKEEEKIERVVEVMKTLHPAHLSVFRFLIAHLGRVCKHAEKNLMNSKNVST 929

Query: 62  L 62
           +
Sbjct: 930 V 930


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 9   ACHVRRATQEHAVASLKTLHTILQQAARLR 38
           A H + + Q  +VA  K L  IL+Q A L+
Sbjct: 705 ALHSQESRQRSSVAGNKQLQKILEQLAELK 734


>SPCC622.12c |||NADP-specific glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 451

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 17/58 (29%), Positives = 25/58 (43%)

Query: 7   IAACHVRRATQEHAVASLKTLHTILQQAARLRVGKYSKAVVSASRNAVKENNVEALIK 64
           I A   +RA+   + +  K  H I        VG+   A+  A++N V      ALIK
Sbjct: 272 IMALKEKRASIADSASLCKKHHYIAGARPWTNVGEIDIALPCATQNEVSGEEAAALIK 329


>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 14/52 (26%), Positives = 20/52 (38%)

Query: 1   MLNEELIAACHVRRATQEHAVASLKTLHTILQQAARLRVGKYSKAVVSASRN 52
           M  EEL  A HV        +  +   H IL    +  +G+   A+ S   N
Sbjct: 411 MAVEELSFAAHVDYLQNSEFIDLVNADHIILVHGEQTNMGRLKSALASKFHN 462


>SPAC23G3.11 |rpn6||19S proteasome regulatory subunit
          Rpn6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 43 SKAVVSASRNAVKENNVEALIKI 65
          SK+ +  + NAVK N++E  I +
Sbjct: 3  SKSSLELANNAVKSNDIEKAIDL 25


>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1106

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 13/35 (37%), Positives = 16/35 (45%)

Query: 29  TILQQAARLRVGKYSKAVVSASRNAVKENNVEALI 63
           TI +  A LR    +        NA+  NNVE LI
Sbjct: 861 TIFRNTAHLRYKADTFVPCGGRPNAININNVEQLI 895


>SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate
           transaminase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 696

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 9/37 (24%), Positives = 19/37 (51%)

Query: 11  HVRRATQEHAVASLKTLHTILQQAARLRVGKYSKAVV 47
           HV R  +E   ++ +T+ T+  + A +  G Y   ++
Sbjct: 306 HVHRLRREGGGSTTRTIETLEMEIASVMKGNYDHYMI 342


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 10/37 (27%), Positives = 22/37 (59%)

Query: 31  LQQAARLRVGKYSKAVVSASRNAVKENNVEALIKIIQ 67
           L +A  + V   S+  +++ R   +EN +EAL+ +++
Sbjct: 89  LLKAREISVLSISEKCLTSPRAGTRENALEALMLLVE 125


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 12/55 (21%), Positives = 24/55 (43%)

Query: 2   LNEELIAACHVRRATQEHAVASLKTLHTILQQAARLRVGKYSKAVVSASRNAVKE 56
           LN +L++   V+   +EH V       +++QQ ++       K       N +K+
Sbjct: 343 LNVDLLSLPSVKSLREEHKVLYHTVSQSVVQQFSKFLTSDMHKFSTILDSNELKD 397


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.126    0.322 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,484
Number of Sequences: 5004
Number of extensions: 5957
Number of successful extensions: 21
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 9
length of query: 72
length of database: 2,362,478
effective HSP length: 52
effective length of query: 20
effective length of database: 2,102,270
effective search space: 42045400
effective search space used: 42045400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)