GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002765-TA|BGIBMGA002765-PA|undefined
         (72 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0869 - 28883688-28884983                                         26   4.3  
12_02_0019 - 12366259-12366819,12367653-12367685,12368294-123683...    25   5.6  
03_05_0797 - 27789692-27789715,27790304-27790417,27791020-277911...    25   7.5  
03_05_0001 - 19386264-19386284,19386446-19386517,19386614-193873...    25   9.9  
01_06_0690 + 31265682-31265834,31266045-31266273,31266989-31267395     25   9.9  
01_03_0303 + 14792842-14792949,14793659-14793760,14794657-147948...    25   9.9  

>04_04_0869 - 28883688-28884983
          Length = 431

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 15/48 (31%), Positives = 22/48 (45%)

Query: 1   MLNEELIAACHVRRATQEHAVASLKTLHTILQQAARLRVGKYSKAVVS 48
           + + EL+         Q    ASLKT+   +Q  A    GKY  +VV+
Sbjct: 240 LTSAELVTLLQYHALPQYAPKASLKTIKGHIQTLASTGAGKYDLSVVT 287


>12_02_0019 -
           12366259-12366819,12367653-12367685,12368294-12368363,
           12368582-12368712,12369627-12369673,12369803-12369879,
           12369963-12370027,12370105-12370191,12370300-12370389,
           12370972-12371037,12371608-12371664,12371749-12371850,
           12373018-12373554
          Length = 640

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/22 (45%), Positives = 16/22 (72%)

Query: 40  GKYSKAVVSASRNAVKENNVEA 61
           G ++K +V +S+NAVK   V+A
Sbjct: 146 GSFTKGIVDSSKNAVKAVQVKA 167


>03_05_0797 -
           27789692-27789715,27790304-27790417,27791020-27791199,
           27791285-27791376,27791797-27791908,27791990-27792208,
           27792556-27792592,27793719-27793819,27793963-27794058,
           27794312-27794437,27794555-27794869
          Length = 471

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 27  LHTILQQAARLRVGKYSKAVVSASRNAVKENNVE 60
           L+  L  A R+      KA+V A   ++KEN+V+
Sbjct: 349 LYKELDYATRISYASLWKALVFADEKSIKENSVK 382


>03_05_0001 -
           19386264-19386284,19386446-19386517,19386614-19387357,
           19387454-19388884,19388953-19389118,19392035-19392114,
           19392393-19392462,19392550-19392761,19392837-19392890,
           19393471-19393623,19393715-19393930,19394029-19394248,
           19394332-19394399,19394510-19394643,19394755-19394854,
           19394943-19395421,19395506-19395699,19396270-19396355,
           19396364-19396444,19396842-19397023,19397305-19397346,
           19398247-19398558,19399374-19399434,19399435-19399617,
           19399744-19399863,19400380-19401051,19402597-19402668,
           19402742-19402865,19403563-19403651,19405023-19405097
          Length = 2170

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 4   EELIAACHVRRATQEHAVASLKTLHTILQQAARLRVGKYSKAVVSASRNAVKENNVEALI 63
           E+L  A H  + T E +++SLK L     QA  L +    K ++  +    +  NVE LI
Sbjct: 174 EDLPPALHSSKFTFEESLSSLKPLSL---QATELDLSIEVKKILLLALTMYQIPNVENLI 230

Query: 64  KIIQ 67
             +Q
Sbjct: 231 PNLQ 234


>01_06_0690 + 31265682-31265834,31266045-31266273,31266989-31267395
          Length = 262

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 8   AACHVRRATQEHAVASLKTLHTILQQAARLRVGKYSKAVVSASRNAVKENNV 59
           A   V RA+ E+           + +A RLR     KA+ +A++  +KENN+
Sbjct: 155 AEFEVARASAEYRALVTALPEVFVGRADRLRA--VVKAMCAAAKQCMKENNM 204


>01_03_0303 + 14792842-14792949,14793659-14793760,14794657-14794800,
            14794906-14794986,14795078-14795147,14795267-14795337,
            14795427-14795594,14796030-14796074,14796449-14796511,
            14796594-14796869,14797858-14797971,14798099-14798225,
            14798315-14798484,14798743-14798841,14799577-14799630,
            14801487-14801522,14801741-14801844,14801952-14802186,
            14802377-14802609,14802846-14803346,14803422-14803716,
            14805796-14805881,14806952-14807064,14807303-14807385,
            14808014-14808866,14809215-14809364,14809963-14811146
          Length = 1854

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 14/62 (22%), Positives = 30/62 (48%)

Query: 2    LNEELIAACHVRRATQEHAVASLKTLHTILQQAARLRVGKYSKAVVSASRNAVKENNVEA 61
            L+ E +  C +   +  ++   +       Q   +L   +  K++ S+   A+KENN+EA
Sbjct: 1696 LDPEYLQTCQLTEKSDVYSFGVVILEILTGQMPLKLEGSELQKSLSSSFLLAMKENNLEA 1755

Query: 62   LI 63
            ++
Sbjct: 1756 ML 1757


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.126    0.322 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,462,732
Number of Sequences: 37544
Number of extensions: 34723
Number of successful extensions: 111
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 108
Number of HSP's gapped (non-prelim): 6
length of query: 72
length of database: 14,793,348
effective HSP length: 52
effective length of query: 20
effective length of database: 12,841,060
effective search space: 256821200
effective search space used: 256821200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)