GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002765-TA|BGIBMGA002765-PA|undefined
         (72 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2495| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.2e-11)         28   1.3  
SB_55261| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.9  
SB_9017| Best HMM Match : zf-C3HC4 (HMM E-Value=7.9e-12)               26   3.8  
SB_55322| Best HMM Match : Defensin_1 (HMM E-Value=0.49)               26   5.1  
SB_47756| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.7  
SB_16705| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.7  

>SB_2495| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.2e-11)
          Length = 2024

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 17/60 (28%), Positives = 27/60 (45%)

Query: 1    MLNEELIAACHVRRATQEHAVASLKTLHTILQQAARLRVGKYSKAVVSASRNAVKENNVE 60
            M  E LIA     +A+ E  V SLK   T++Q      V  + ++   + +  V+E   E
Sbjct: 1063 MEKEYLIAQLRSEKASIERQVESLKNQITVIQSENEANVSIHVESQTESYKQEVREKEYE 1122


>SB_55261| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 211

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 2/49 (4%)

Query: 9   ACHVRRATQEHAVASLKTLHTI-LQQAARLRVGKYSKAVVSA-SRNAVK 55
           +C V   T++H +A L  L+ I  + A RLR+ + +  ++S   RNA++
Sbjct: 63  SCFVLIRTRQHGIAGLPQLNFIGKKTAGRLRLERRNPGMISQFFRNAIE 111


>SB_9017| Best HMM Match : zf-C3HC4 (HMM E-Value=7.9e-12)
          Length = 203

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/21 (61%), Positives = 14/21 (66%), Gaps = 1/21 (4%)

Query: 5   ELIAACHVR-RATQEHAVASL 24
           E   ACH R RATQ H +ASL
Sbjct: 118 EACIACHKRMRATQHHHIASL 138


>SB_55322| Best HMM Match : Defensin_1 (HMM E-Value=0.49)
          Length = 285

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 19  HAVASLKTLHTILQQAARLRVGKYSKAVVSASRNAVKENNVEALIKII 66
           H V S  T+HT++ Q  +L  G   K++  AS  A       + +K++
Sbjct: 177 HKVFSSDTIHTMINQEKKL-AGFSVKSIGGASPKASASTGGNSTVKVV 223


>SB_47756| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 102

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 9  ACHVRRATQEHAVASLKTLHTI-LQQAARLRVGK 41
          +C V   T++H +A L  L+ I  + A RLR+G+
Sbjct: 3  SCFVLIRTRQHGIAGLPQLNFIGKKTAGRLRLGR 36


>SB_16705| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 193

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 9  ACHVRRATQEHAVASLKTLHTI-LQQAARLRVGK 41
          +C V   T++H +A L  L+ I  + A RLR+G+
Sbjct: 3  SCFVLIRTRQHGIAGLPQLNFIGKKTAGRLRLGR 36


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.126    0.322 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,728,952
Number of Sequences: 59808
Number of extensions: 42314
Number of successful extensions: 251
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 249
Number of HSP's gapped (non-prelim): 7
length of query: 72
length of database: 16,821,457
effective HSP length: 50
effective length of query: 22
effective length of database: 13,831,057
effective search space: 304283254
effective search space used: 304283254
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)