Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002765-TA|BGIBMGA002765-PA|undefined
(72 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40933-1|AAA81672.1| 699|Caenorhabditis elegans Bbs (bardet-bie... 50 2e-07
U41105-8|AAA82403.1| 460|Caenorhabditis elegans Hypothetical pr... 27 2.1
U23179-7|AAC46721.1| 782|Caenorhabditis elegans Hypothetical pr... 27 2.1
AF047661-2|AAK71389.1| 886|Caenorhabditis elegans Hypothetical ... 26 3.7
AF047661-1|AAK71388.2| 915|Caenorhabditis elegans Hypothetical ... 26 3.7
AF000191-3|AAB52882.1| 522|Caenorhabditis elegans Mediator prot... 25 4.9
Z68215-11|CAH60786.1| 1301|Caenorhabditis elegans Hypothetical p... 25 8.5
Z68215-6|CAB54213.2| 1304|Caenorhabditis elegans Hypothetical pr... 25 8.5
Z68215-5|CAA92456.1| 1586|Caenorhabditis elegans Hypothetical pr... 25 8.5
Z68215-4|CAA92457.1| 1584|Caenorhabditis elegans Hypothetical pr... 25 8.5
>U40933-1|AAA81672.1| 699|Caenorhabditis elegans Bbs (bardet-biedl
syndrome) proteinprotein 2 protein.
Length = 699
Score = 50.0 bits (114), Expect = 2e-07
Identities = 23/64 (35%), Positives = 41/64 (64%)
Query: 9 ACHVRRATQEHAVASLKTLHTILQQAARLRVGKYSKAVVSASRNAVKENNVEALIKIIQV 68
A +R QE V SL+ L+ I++ +RLRVG+ + +V + R+A+ ++N + + KI+Q
Sbjct: 636 AAQLRWNNQERCVKSLRRLNKIIENCSRLRVGEPGRQIVVSCRSAIADDNKQIITKILQY 695
Query: 69 GESL 72
G S+
Sbjct: 696 GASV 699
>U41105-8|AAA82403.1| 460|Caenorhabditis elegans Hypothetical
protein T02G5.4 protein.
Length = 460
Score = 26.6 bits (56), Expect = 2.1
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 45 AVVSASRNAVKENNVEALIKIIQVGES 71
AV+ AS+ AV E N++ L +I+ G++
Sbjct: 325 AVILASQEAVSEQNLKPLARILAYGDA 351
>U23179-7|AAC46721.1| 782|Caenorhabditis elegans Hypothetical
protein C27D6.1 protein.
Length = 782
Score = 26.6 bits (56), Expect = 2.1
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 2 LNEELIAACHVRRATQEHAVASLKTLHTILQQAARLRVGKYSKAVVSASRNAVKENNVEA 61
L +EL+A+ + R EH +ASL+ + + Q + VG A+ + + +V
Sbjct: 568 LEQELLAS-DLERKNLEHKIASLENCISKVSQLLNVNVGGVFDAIFDRIEELIAQESVYR 626
Query: 62 LI 63
++
Sbjct: 627 VV 628
>AF047661-2|AAK71389.1| 886|Caenorhabditis elegans Hypothetical
protein M70.3b protein.
Length = 886
Score = 25.8 bits (54), Expect = 3.7
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 9 ACHVRRATQ--EHAVASLKTLHTILQQAARLRV-GKYSKAVVSASRNA-VKENNVEALIK 64
A H+ + Q +A S +T+ ++ + V GK+ K+VV+AS+N+ + E + A+ K
Sbjct: 371 AAHLEKLIQMSSNAPISAQTIIGSIKPCTPVAVDGKHQKSVVTASQNSQLLERTLNAVKK 430
Query: 65 IIQV 68
I ++
Sbjct: 431 ISEL 434
>AF047661-1|AAK71388.2| 915|Caenorhabditis elegans Hypothetical
protein M70.3a protein.
Length = 915
Score = 25.8 bits (54), Expect = 3.7
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 9 ACHVRRATQ--EHAVASLKTLHTILQQAARLRV-GKYSKAVVSASRNA-VKENNVEALIK 64
A H+ + Q +A S +T+ ++ + V GK+ K+VV+AS+N+ + E + A+ K
Sbjct: 400 AAHLEKLIQMSSNAPISAQTIIGSIKPCTPVAVDGKHQKSVVTASQNSQLLERTLNAVKK 459
Query: 65 IIQV 68
I ++
Sbjct: 460 ISEL 463
>AF000191-3|AAB52882.1| 522|Caenorhabditis elegans Mediator protein
1.2 protein.
Length = 522
Score = 25.4 bits (53), Expect = 4.9
Identities = 8/22 (36%), Positives = 17/22 (77%)
Query: 4 EELIAACHVRRATQEHAVASLK 25
E +I+AC+ ++ ++H VA++K
Sbjct: 395 ESMISACYEKQGMKKHTVAAIK 416
>Z68215-11|CAH60786.1| 1301|Caenorhabditis elegans Hypothetical
protein C53B4.4d protein.
Length = 1301
Score = 24.6 bits (51), Expect = 8.5
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 41 KYSKAVVSASRNAVKENNVEALIKIIQVGE 70
K AV+S+S + EN+VE IK++ VG+
Sbjct: 504 KVIDAVLSSSADFGMENSVEDEIKMLLVGD 533
>Z68215-6|CAB54213.2| 1304|Caenorhabditis elegans Hypothetical
protein C53B4.4c protein.
Length = 1304
Score = 24.6 bits (51), Expect = 8.5
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 41 KYSKAVVSASRNAVKENNVEALIKIIQVGE 70
K AV+S+S + EN+VE IK++ VG+
Sbjct: 504 KVIDAVLSSSADFGMENSVEDEIKMLLVGD 533
>Z68215-5|CAA92456.1| 1586|Caenorhabditis elegans Hypothetical
protein C53B4.4b protein.
Length = 1586
Score = 24.6 bits (51), Expect = 8.5
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 41 KYSKAVVSASRNAVKENNVEALIKIIQVGE 70
K AV+S+S + EN+VE IK++ VG+
Sbjct: 784 KVIDAVLSSSADFGMENSVEDEIKMLLVGD 813
>Z68215-4|CAA92457.1| 1584|Caenorhabditis elegans Hypothetical
protein C53B4.4a protein.
Length = 1584
Score = 24.6 bits (51), Expect = 8.5
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 41 KYSKAVVSASRNAVKENNVEALIKIIQVGE 70
K AV+S+S + EN+VE IK++ VG+
Sbjct: 784 KVIDAVLSSSADFGMENSVEDEIKMLLVGD 813
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.317 0.126 0.322
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,257,457
Number of Sequences: 27539
Number of extensions: 30013
Number of successful extensions: 116
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 108
Number of HSP's gapped (non-prelim): 10
length of query: 72
length of database: 12,573,161
effective HSP length: 52
effective length of query: 20
effective length of database: 11,141,133
effective search space: 222822660
effective search space used: 222822660
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)
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