GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002765-TA|BGIBMGA002765-PA|undefined
         (72 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    24   0.21 
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    22   0.64 
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    19   6.0  

>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
          transcriptase protein.
          Length = 127

 Score = 23.8 bits (49), Expect = 0.21
 Identities = 13/61 (21%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 7  IAACHVRRATQEHAVASLKTLHTILQQAARLRVGKYSKAVVSASRNAVKENNVEALIKII 66
          +A   + +   +H + S KT+  IL++   L+  +    +     N    N+++ + KII
Sbjct: 9  VATFRLSKVMLDHTINSKKTIMRILKEVCVLQANRACILIKDLFDNV--HNHIQNIFKII 66

Query: 67 Q 67
          +
Sbjct: 67 K 67


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
          transcriptase protein.
          Length = 110

 Score = 22.2 bits (45), Expect = 0.64
 Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 18 EHAVASLKTLHTILQQAARLRVGKYSKAVVSASRNAVKENNVEALIKIIQ 67
          +H + S KT+  IL++   L+  +    +     N    N+++ + KII+
Sbjct: 3  DHTINSKKTIMRILKEVCVLQANRACILIKDLFDNV--HNHIQNIFKIIK 50


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
          preprohormone protein.
          Length = 107

 Score = 19.0 bits (37), Expect = 6.0
 Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 1/23 (4%)

Query: 40 GKYSKAVVS-ASRNAVKENNVEA 61
          GK S ++   A+RNA++ +NV A
Sbjct: 33 GKRSTSLEELANRNAIQSDNVFA 55


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.126    0.322 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,213
Number of Sequences: 429
Number of extensions: 435
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 72
length of database: 140,377
effective HSP length: 46
effective length of query: 26
effective length of database: 120,643
effective search space:  3136718
effective search space used:  3136718
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)
S2: 36 (18.6 bits)