Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002764-TA|BGIBMGA002764-PA|IPR011047|Quinonprotein
alcohol dehydrogenase-like
(482 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC014140-1|AAH14140.1| 721|Homo sapiens Bardet-Biedl syndrome 2... 355 1e-97
AF342736-1|AAK28552.1| 721|Homo sapiens BBS2 protein. 354 3e-97
AK027635-1|BAB55252.1| 721|Homo sapiens protein ( Homo sapiens ... 352 2e-96
AB208905-1|BAD92142.1| 321|Homo sapiens Bardet-Biedl syndrome 2... 184 6e-46
>BC014140-1|AAH14140.1| 721|Homo sapiens Bardet-Biedl syndrome 2
protein.
Length = 721
Score = 355 bits (874), Expect = 1e-97
Identities = 205/492 (41%), Positives = 283/492 (57%), Gaps = 25/492 (5%)
Query: 1 AYDVHDNSDLFFKEAPDGVNVIVAGSFGKYTKTLAIVGGNSSVLGLTWEGNEAFWNVVGG 60
AYDV++NSDLF++E DG NV+V G+ G + LAI+GGN ++ G EG++ FW V G
Sbjct: 102 AYDVYNNSDLFYREVADGANVVVLGTLGDISSPLAIIGGNCALQGFNHEGSDLFWTVTGD 161
Query: 61 KVTAMITFDFDRDGESELIVGSEDSFIRVLKNNQFVAEIAETGPVVCLSVISDVRFAYGL 120
V ++ DFD DG+ EL+VGSED IRV K ++ VAE+ ET V L + RF Y L
Sbjct: 162 NVNSLALCDFDGDGKKELLVGSEDFDIRVFKEDEIVAEMTETEIVTSLCPMYGSRFGYAL 221
Query: 121 ANGTIGIYEDGVRLWRVKSKQNAIS-----LQWSG-EALACCWSNGRVDWRDGSSGRVLR 174
+NGT+G+Y+ R WR+KSK +A+S L G L WSNG+VD R +G V+
Sbjct: 222 SNGTVGVYDKTSRYWRIKSKNHAMSIHAFDLNSDGVNELITGWSNGKVDARSDRTGEVIF 281
Query: 175 RVQMRASAAAMLLADYRALGTPDLVCVSVRGE--GYSP-TQESSGFNDTTKNPATEEDRL 231
+ ++ A ++ DYR G L+C SV GE GY P T E G + + E+D
Sbjct: 282 KDNFSSAIAGVVEGDYRMDGHIQLICCSVDGEIRGYLPGTAEMRG---NLMDTSAEQD-- 336
Query: 232 AITELLNKKQALMLELQHYEANA-ASAVMPDLEDDRPTTAMPTNTRLQVAVVHSL----D 286
I EL KKQ L+LEL++YE NA A P E D +P NTRL + SL
Sbjct: 337 LIRELSQKKQNLLLELRNYEENAKAELASPLNEADGHRGIIPANTRLHTTLSVSLGNETQ 396
Query: 287 EGCLNLAISTNNETIVRAALILAEGIFESGETLARHPPLSQIRPILHVPLHPPRDVPVDV 346
L IST+N+TI+RA LI AEGIF +GE+ HP + + + +P+ PP+DVPVD+
Sbjct: 397 TAHTELRISTSNDTIIRAVLIFAEGIF-TGESHVVHPSIHNLSSSICIPIVPPKDVPVDL 455
Query: 347 HIKALVGYPNSEQYHIFEMTKQLPRFAMYTMNYNATNRINYNSSYVTFQITERLQRICIW 406
H+KA VGY +S Q+H+FE T+QLPRF+MY + + + + SYV F I ER QR+ +W
Sbjct: 456 HLKAFVGYRSSTQFHVFESTRQLPRFSMYAL--TSLDPASEPISYVNFTIAERAQRVVVW 513
Query: 407 AXXXXXXXXXXXXXXXDAKEFHVNLTCLRDQSTLDMNFNVDGNVKITTSDMRLAGDLVQS 466
F V T LR+ L + + G + I T D+ LAGD++QS
Sbjct: 514 LGQNFLLPEDTHIQNA---PFQVCFTSLRNGGHLHIKIKLSGEITINTDDIDLAGDIIQS 570
Query: 467 LAVFLNLTDLKV 478
+A F + DL+V
Sbjct: 571 MASFFAIEDLQV 582
>AF342736-1|AAK28552.1| 721|Homo sapiens BBS2 protein.
Length = 721
Score = 354 bits (871), Expect = 3e-97
Identities = 205/492 (41%), Positives = 282/492 (57%), Gaps = 25/492 (5%)
Query: 1 AYDVHDNSDLFFKEAPDGVNVIVAGSFGKYTKTLAIVGGNSSVLGLTWEGNEAFWNVVGG 60
AYDV++NSDLF++E DG N IV G+ G + LAI+GGN ++ G EG++ FW V G
Sbjct: 102 AYDVYNNSDLFYREVADGANAIVLGTLGDISSPLAIIGGNCALQGFNHEGSDLFWTVTGD 161
Query: 61 KVTAMITFDFDRDGESELIVGSEDSFIRVLKNNQFVAEIAETGPVVCLSVISDVRFAYGL 120
V ++ DFD DG+ EL+VGSED IRV K ++ VAE+ ET V L + RF Y L
Sbjct: 162 NVNSLALCDFDGDGKKELLVGSEDFDIRVFKEDEIVAEMTETEIVTSLCPMYGSRFGYAL 221
Query: 121 ANGTIGIYEDGVRLWRVKSKQNAIS-----LQWSG-EALACCWSNGRVDWRDGSSGRVLR 174
+NGT+G+Y+ R WR+KSK +A+S L G L WSNG+VD R +G V+
Sbjct: 222 SNGTVGVYDKTSRYWRIKSKNHAMSIHAFDLNSDGVNELITGWSNGKVDARSDRTGEVIF 281
Query: 175 RVQMRASAAAMLLADYRALGTPDLVCVSVRGE--GYSP-TQESSGFNDTTKNPATEEDRL 231
+ ++ A ++ DYR G L+C SV GE GY P T E G + + E+D
Sbjct: 282 KDNFSSAIAGVVEGDYRMDGHIQLICCSVDGEIRGYLPGTAEMRG---NLMDTSAEQD-- 336
Query: 232 AITELLNKKQALMLELQHYEANA-ASAVMPDLEDDRPTTAMPTNTRLQVAVVHSL----D 286
I EL KKQ L+LEL++YE NA A P E D +P NTRL + SL
Sbjct: 337 LIRELSQKKQNLLLELRNYEENAKAELASPLNEADGHRGIIPANTRLHTTLSVSLGNETQ 396
Query: 287 EGCLNLAISTNNETIVRAALILAEGIFESGETLARHPPLSQIRPILHVPLHPPRDVPVDV 346
L IST+N+TI+RA LI AEGIF +GE+ HP + + + +P+ PP+DVPVD+
Sbjct: 397 TAHTELRISTSNDTIIRAVLIFAEGIF-TGESHVVHPSIHNLSSSICIPIVPPKDVPVDL 455
Query: 347 HIKALVGYPNSEQYHIFEMTKQLPRFAMYTMNYNATNRINYNSSYVTFQITERLQRICIW 406
H+KA VGY +S Q+H+FE T+QLPRF+MY + + + + SYV F I ER QR+ +W
Sbjct: 456 HLKAFVGYRSSTQFHVFESTRQLPRFSMYAL--TSLDPASEPISYVNFTIAERAQRVVVW 513
Query: 407 AXXXXXXXXXXXXXXXDAKEFHVNLTCLRDQSTLDMNFNVDGNVKITTSDMRLAGDLVQS 466
F V T LR+ L + + G + I T D+ LAGD++QS
Sbjct: 514 LGQNFLLPEDTHIQNA---PFQVCFTSLRNGGHLHIKIKLSGEITINTDDIDLAGDIIQS 570
Query: 467 LAVFLNLTDLKV 478
+A F + DL+V
Sbjct: 571 MASFFAIEDLQV 582
>AK027635-1|BAB55252.1| 721|Homo sapiens protein ( Homo sapiens
cDNA FLJ14729 fis, clone NT2RP3001896. ).
Length = 721
Score = 352 bits (865), Expect = 2e-96
Identities = 204/492 (41%), Positives = 281/492 (57%), Gaps = 25/492 (5%)
Query: 1 AYDVHDNSDLFFKEAPDGVNVIVAGSFGKYTKTLAIVGGNSSVLGLTWEGNEAFWNVVGG 60
AYDV++NSDLF++E DG N +V G+ G + LAI+GGN ++ G EG++ FW V G
Sbjct: 102 AYDVYNNSDLFYREVADGANAVVLGTLGDISSPLAIIGGNCALQGFNHEGSDLFWTVTGD 161
Query: 61 KVTAMITFDFDRDGESELIVGSEDSFIRVLKNNQFVAEIAETGPVVCLSVISDVRFAYGL 120
V ++ DFD DG+ EL+VGSED IRV K ++ VAE+ ET V L + RF Y L
Sbjct: 162 NVNSLALRDFDGDGKKELLVGSEDFDIRVFKEDEIVAEMTETEIVTSLCPMYGSRFGYAL 221
Query: 121 ANGTIGIYEDGVRLWRVKSKQNAIS-----LQWSG-EALACCWSNGRVDWRDGSSGRVLR 174
+NGT+G+Y+ R WR+KSK +A+S L G L WSNG+VD R +G V+
Sbjct: 222 SNGTVGVYDKTSRYWRIKSKNHAMSIHAFDLNSDGVNELITGWSNGKVDARSDRTGEVIF 281
Query: 175 RVQMRASAAAMLLADYRALGTPDLVCVSVRGE--GYSP-TQESSGFNDTTKNPATEEDRL 231
+ ++ A ++ DYR G L+C SV GE GY P T E G + + E+D
Sbjct: 282 KDNFSSAIAGVVEGDYRMDGHIQLICCSVDGEIRGYLPGTAEMRG---NLMDTSAEQD-- 336
Query: 232 AITELLNKKQALMLELQHYEANA-ASAVMPDLEDDRPTTAMPTNTRLQVAVVHSL----D 286
I EL KKQ L+LEL++YE NA A P E D +P NTRL + SL
Sbjct: 337 LIRELSQKKQNLLLELRNYEENAKAELASPLNEADGHRGIIPANTRLHTTLSVSLGNETQ 396
Query: 287 EGCLNLAISTNNETIVRAALILAEGIFESGETLARHPPLSQIRPILHVPLHPPRDVPVDV 346
L IST+N+TI+RA LI AEGIF +GE+ HP + + + +P+ PP+DVPVD+
Sbjct: 397 TAHTELRISTSNDTIIRAVLIFAEGIF-TGESHVVHPSIHNLSSSICIPIVPPKDVPVDL 455
Query: 347 HIKALVGYPNSEQYHIFEMTKQLPRFAMYTMNYNATNRINYNSSYVTFQITERLQRICIW 406
H KA VGY +S Q+H+FE T+QLPRF+MY + + + + SYV F I ER QR+ +W
Sbjct: 456 HSKAFVGYRSSTQFHVFESTRQLPRFSMYAL--TSLDPASEPISYVNFTIAERAQRVVVW 513
Query: 407 AXXXXXXXXXXXXXXXDAKEFHVNLTCLRDQSTLDMNFNVDGNVKITTSDMRLAGDLVQS 466
F V T LR+ L + + G + I T D+ LAGD++QS
Sbjct: 514 LGQNFLLPEDTHIQNA---PFQVCFTSLRNGGHLHIKIKLSGEITINTDDIDLAGDIIQS 570
Query: 467 LAVFLNLTDLKV 478
+A F + DL+V
Sbjct: 571 MASFFAIEDLQV 582
>AB208905-1|BAD92142.1| 321|Homo sapiens Bardet-Biedl syndrome 2
protein variant protein.
Length = 321
Score = 184 bits (448), Expect = 6e-46
Identities = 94/212 (44%), Positives = 129/212 (60%), Gaps = 6/212 (2%)
Query: 1 AYDVHDNSDLFFKEAPDGVNVIVAGSFGKYTKTLAIVGGNSSVLGLTWEGNEAFWNVVGG 60
AYDV++NSDLF++E DG N IV G+ G + LAI+GGN ++ G EG++ FW V G
Sbjct: 106 AYDVYNNSDLFYREVADGANAIVLGTLGDISSPLAIIGGNCALQGFNHEGSDLFWTVTGD 165
Query: 61 KVTAMITFDFDRDGESELIVGSEDSFIRVLKNNQFVAEIAETGPVVCLSVISDVRFAYGL 120
V ++ DFD DG+ EL+VGSED IRV K ++ VAE+ ET V L + RF Y L
Sbjct: 166 NVNSLALCDFDGDGKKELLVGSEDFDIRVFKEDEIVAEMTETEIVTSLCPMYGSRFGYAL 225
Query: 121 ANGTIGIYEDGVRLWRVKSKQNAIS-----LQWSG-EALACCWSNGRVDWRDGSSGRVLR 174
+NGT+G+Y+ R WR+KSK +A+S L G L WSNG+VD R +G V+
Sbjct: 226 SNGTVGVYDKTSRYWRIKSKNHAMSIHAFDLNSDGVNELITGWSNGKVDARSDRTGEVIF 285
Query: 175 RVQMRASAAAMLLADYRALGTPDLVCVSVRGE 206
+ ++ A ++ DYR G L+C SV GE
Sbjct: 286 KDNFSSAIAGVVEGDYRMDGHIQLICCSVDGE 317
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.319 0.134 0.397
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,446,891
Number of Sequences: 224733
Number of extensions: 2680907
Number of successful extensions: 7767
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7736
Number of HSP's gapped (non-prelim): 4
length of query: 482
length of database: 73,234,838
effective HSP length: 93
effective length of query: 389
effective length of database: 52,334,669
effective search space: 20358186241
effective search space used: 20358186241
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 67 (31.1 bits)
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