GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002764-TA|BGIBMGA002764-PA|IPR011047|Quinonprotein
alcohol dehydrogenase-like
         (482 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   3.6  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    23   4.8  
AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           22   8.3  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    22   8.3  

>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.4 bits (48), Expect = 3.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 322 HPPLSQIRPILHVPLHPP 339
           +PPL Q+ P+   P+ PP
Sbjct: 174 YPPLPQVPPLPLPPIFPP 191


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)

Query: 18  GVNVIVAGSFGKYTKTLAIVGGNSSVLGLTWEGNEAFWNVV 58
           G  V  AG+ GKYT    ++G N  ++ L  EG    W VV
Sbjct: 278 GAPVKGAGNSGKYTGEAGMLGYN-EIVELQKEGG---WKVV 314


>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 22.2 bits (45), Expect = 8.3
 Identities = 14/60 (23%), Positives = 24/60 (40%)

Query: 213 ESSGFNDTTKNPATEEDRLAITELLNKKQALMLELQHYEANAASAVMPDLEDDRPTTAMP 272
           ES+      K    E  R+A+  + + +  L L+     ++ +S   P   DD  T   P
Sbjct: 88  ESNSRGGNKKLSKVETLRMAVEYIRSLEDLLALDESTVSSSTSSIPSPSTTDDLSTNPTP 147


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 8.3
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query: 333 HVPLHPPRDVPVDVHIKALVGYPNSE 358
           H+   PP+D P D  + A     +SE
Sbjct: 57  HLQARPPQDSPYDASVAAACKLYSSE 82


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.134    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,007
Number of Sequences: 317
Number of extensions: 4275
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 4
length of query: 482
length of database: 114,650
effective HSP length: 59
effective length of query: 423
effective length of database: 95,947
effective search space: 40585581
effective search space used: 40585581
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)