GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002764-TA|BGIBMGA002764-PA|IPR011047|Quinonprotein
alcohol dehydrogenase-like
         (482 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    31   0.36 
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    28   3.3  
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy...    27   5.8  
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    27   5.8  
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma...    27   7.7  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    27   7.7  
SPAC664.08c |||traub transciption factor family protein |Schizos...    27   7.7  

>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 31.1 bits (67), Expect = 0.36
 Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 1/107 (0%)

Query: 219 DTTKNPATEEDRLAITELLNKKQALMLELQHYEANAASAVMPDLEDDRPTTAMPTNTRLQ 278
           D  + P  EE+ + + E+ N++Q     L   +AN++++V  +            +    
Sbjct: 269 DNIREPQEEENDVDVDEIFNRQQLNQPALDLNDANSSNSVPVEFNSLHSQNVDYRDEVDS 328

Query: 279 VAVVHSLDEGCLNLAISTNNETIVRAALILAEGIFESGETLARHPPL 325
           +    ++DE       S  +E IV  A+  A GI ES  T   H P+
Sbjct: 329 LRPQFNVDEQSSISHSSNASENIVDGAVTQANGI-ESDFTRVDHEPI 374


>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 4/54 (7%)

Query: 423 DAKEFHVNLTCLRDQSTLDMNFNVDGNVKITTSDMRLAGDLVQSLAVFLNLTDL 476
           + +E HV L   R  ST + N N+D N  +  +DM +  +   S+ V+ +LT+L
Sbjct: 698 EPEEEHVGL---RKNSTQEKNANLDPNEALKRADMMMLQEGASSM-VYYSLTNL 747


>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 922

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 18/71 (25%), Positives = 40/71 (56%), Gaps = 5/71 (7%)

Query: 79  IVGSEDSFIRV-LKNNQFVAEIAET---GPVVCLSVISDVRFAYGLANGTIGIYEDGVRL 134
           IVG  +S +   LK  Q +++  ++     V C++   ++ +A G A+G+I +++DG  L
Sbjct: 39  IVGGLESVLEWDLKTGQLLSKWKDSDCSAKVTCIANFDEM-YAVGYADGSIRLWKDGELL 97

Query: 135 WRVKSKQNAIS 145
             +   ++A++
Sbjct: 98  ITLNGHKSAVT 108


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 13/65 (20%), Positives = 31/65 (47%)

Query: 34  LAIVGGNSSVLGLTWEGNEAFWNVVGGKVTAMITFDFDRDGESELIVGSEDSFIRVLKNN 93
           L++ GG+  ++ +     EA W ++G     ++   +  D +   I+   D+ + + KN 
Sbjct: 90  LSLKGGDIVMVKVDPSPEEAPWEIIGNVENGIVASCWSTDEQVFCIITGGDTILFMTKNF 149

Query: 94  QFVAE 98
             ++E
Sbjct: 150 DIISE 154


>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 630

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 277 LQVAVVHSLDEGCL--NLAISTNNETIVRAALILAEGIFESGETL 319
           L V  ++SL E C   NL+I   +E + +   I  EG++E   TL
Sbjct: 204 LSVDELNSLSEKCFSKNLSIEDASEILSKVKEICPEGVYEGQLTL 248


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1150

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 6/83 (7%)

Query: 13   KEAPDGVNVIVAGSFGKYTKTLAIVGGNSSVLGLTWEGNEAFWNVVGGKVTAMITFDFDR 72
            K+   G +  +  +F  YT T+   G     +   WE N+        +VTA+      R
Sbjct: 1057 KKEKQGQSFEIFYNFPAYTTTILFAGPTQRKI--VWEKNQT---TAQEQVTAVF-LTAGR 1110

Query: 73   DGESELIVGSEDSFIRVLKNNQF 95
                E++V S+D  I +LKN ++
Sbjct: 1111 VMLPEVVVHSKDDDISILKNTKY 1133


>SPAC664.08c |||traub transciption factor family protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 452

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 14/59 (23%), Positives = 32/59 (54%), Gaps = 5/59 (8%)

Query: 214 SSGFNDTTKNPATEEDRLAITELLNKKQALMLELQHYEANAASAVMPDLEDDRPTTAMP 272
           S   N  + +P+ EED        ++  A+  + +++ ++ AS++  + EDD  ++A+P
Sbjct: 82  SGSLNSQSSSPSEEEDSEE-----DENDAVSEDHENFSSSEASSISEENEDDDQSSAIP 135


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.134    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,130,129
Number of Sequences: 5004
Number of extensions: 86452
Number of successful extensions: 199
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 197
Number of HSP's gapped (non-prelim): 8
length of query: 482
length of database: 2,362,478
effective HSP length: 75
effective length of query: 407
effective length of database: 1,987,178
effective search space: 808781446
effective search space used: 808781446
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)