GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002764-TA|BGIBMGA002764-PA|IPR011047|Quinonprotein
alcohol dehydrogenase-like
         (482 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40933-1|AAA81672.1|  699|Caenorhabditis elegans Bbs (bardet-bie...   217   1e-56
AF106579-6|AAC78199.2|  391|Caenorhabditis elegans Hypothetical ...    32   1.0  
AL033514-14|CAA22100.1|  721|Caenorhabditis elegans Hypothetical...    31   1.8  
AF100670-2|AAN73857.3|  554|Caenorhabditis elegans Hypothetical ...    29   5.5  
AL021175-3|CAA15963.2|  467|Caenorhabditis elegans Hypothetical ...    29   7.3  

>U40933-1|AAA81672.1|  699|Caenorhabditis elegans Bbs (bardet-biedl
           syndrome) proteinprotein 2 protein.
          Length = 699

 Score =  217 bits (530), Expect = 1e-56
 Identities = 146/474 (30%), Positives = 226/474 (47%), Gaps = 22/474 (4%)

Query: 2   YDVHDNSDLFFKEAPDGVNVIVAGSFGKYTKTLAIVGGNSSVLGLTWEGNEAFWNVVGGK 61
           YDVH+N  +F  + PDGV+  V G  G+  + +   GGN  + G    G   +W V G +
Sbjct: 108 YDVHNNLTVFRNDVPDGVSCFVYGKLGELDEAI-YCGGNCCIWGFDKTGANTYWTVTGDQ 166

Query: 62  VTAMITFDFDRDGESELIVGSEDSFIRVLKNNQFVAEIAETGPVVCLSVISDVRFAYGLA 121
           VT M   D+D DGE+EL++GS D  IRV KN+    E+ ET  + CL+ +++  FAY L 
Sbjct: 167 VTTMCLSDYDNDGETELVIGSPDFEIRVFKNDLMRTELMETDEITCLAHVANGCFAYSLN 226

Query: 122 NGTIGIYEDGVRLWRVKSKQNAISL-QWSGEAL-ACCWSNGRVDWRDGSSGRVLRRVQMR 179
           NGTIG Y    R WR+KSK N   +  +  E L    W  G+VD R   +G VL R  + 
Sbjct: 227 NGTIGTYVLKERQWRIKSKSNVSKIFNFEEEGLMVVVWKQGKVDLRFAHNGEVLSRDSVS 286

Query: 180 ASAAAMLLADYRALGTPDLVCVSVRGEGYSPTQESSGFNDTTKNPATEEDRLAITELLNK 239
           +  A+  ++         +VC+  + +G+   +  +G  D T+          I E   K
Sbjct: 287 SHVASASVSKKGDESFITVVCLDGKVKGFKIQRAQNGSIDKTQQ--------LIREFGQK 338

Query: 240 KQALMLELQHYEANAASAVMPDLEDDRPTTAMPTNTRLQVAVVHSLDEGCLNLAISTNNE 299
           K  LM+EL +YE     A   D+E DR    +P +T + V  V + +   L+L +  ++ 
Sbjct: 339 KHNLMMELSNYEQEEQLA---DVEKDR-DFRIPVDTEVAVVFVVNTELQLLSLRVEASHN 394

Query: 300 TIVRAALILAEGIFESGETLARHPPLS-QIRPILHVPLHPPRDVPVDVHIKALVGYPNSE 358
             +R  LI AEG+FE GE+    PP   Q R ++ +PL   +D   D+H K  +G  +S 
Sbjct: 395 IPIRGVLIFAEGLFE-GESYIWIPPNEYQSRSVIDIPLVIDKDSTNDLHTKVFLGQVDSN 453

Query: 359 QYHIFEMTKQLPRFAMYTMNYNATNRINY-NSSYVTFQITERLQRICIWAXXXXXXXXXX 417
           +  + E T+ LP+F  +T+     ++  Y  ++Y+ F I  R  ++  W           
Sbjct: 454 KLMVMENTRILPKFCRFTLLREEYSKFFYMPTAYIQFDINSRAAKLSEWV-QESFTIDAS 512

Query: 418 XXXXXDAKEFHVNLTCLRDQSTLDMNFNV---DGNVKITTSDMRLAGDLVQSLA 468
                D  E       LR +    + F +   +   KI    +   G +VQS A
Sbjct: 513 LVEMFDEPEGEFKFMGLRPKHEKSLMFKISHSEKTCKIYHDKIETMGAIVQSYA 566


>AF106579-6|AAC78199.2|  391|Caenorhabditis elegans Hypothetical
           protein F54E2.1 protein.
          Length = 391

 Score = 31.9 bits (69), Expect = 1.0
 Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 3/102 (2%)

Query: 62  VTAMITFDFDRDGESELIVGSEDSFIRVLKNNQFVAEIAETGPVVCLSVISDVRFAYGLA 121
           V+A +  DF+ +    + V + D+ I+ LK+ +   + AE+GP+      S       L+
Sbjct: 45  VSAQMDSDFNLNN---IYVKTMDNQIKSLKDLRHSRQHAESGPISPFQATSQTLITTNLS 101

Query: 122 NGTIGIYEDGVRLWRVKSKQNAISLQWSGEALACCWSNGRVD 163
           NGT+ +    + +   K   +     +S + +     NG VD
Sbjct: 102 NGTLALMNGFIYVTTSKQSTDQSFRVYSVDNINTIKINGNVD 143


>AL033514-14|CAA22100.1|  721|Caenorhabditis elegans Hypothetical
           protein Y75B8A.12 protein.
          Length = 721

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 6/68 (8%)

Query: 28  GKYTKTLAIVGGNSSVLGLT---WEGNEAFWNV---VGGKVTAMITFDFDRDGESELIVG 81
           G +TK L + G  +  LGL      G +  W +    G  VT ++ F+       ++IVG
Sbjct: 203 GGHTKLLVLYGTKTGRLGLVSVPQGGGKILWEIDTTSGACVTTIVCFNVTGGQFPDIIVG 262

Query: 82  SEDSFIRV 89
            ED  I +
Sbjct: 263 KEDGLIEI 270


>AF100670-2|AAN73857.3|  554|Caenorhabditis elegans Hypothetical
           protein M4.1 protein.
          Length = 554

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 207 GYSPTQESSGFNDTTKN-PATEEDRLAITELLNKKQALMLELQHYEANAASAVMPDLEDD 265
           G++ + ESS  ++  K  P  ++D+  I   L     L  + +  E  AA A MP+++++
Sbjct: 423 GFAQSSESSEESEEKKKKPQQQDDKTTIEAYLKTILELQAKNRELEMTAAMATMPEVQEN 482


>AL021175-3|CAA15963.2|  467|Caenorhabditis elegans Hypothetical
           protein Y6E2A.4 protein.
          Length = 467

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 6/102 (5%)

Query: 195 TPDLVCVSVRGEGYSPTQESSGFNDTTKNPATEEDRLAITELLNKKQALMLELQHYEANA 254
           TP  V  S+ G G     E +G N TTKNP     ++ +T   N +   + +      N+
Sbjct: 197 TPKHVEQSMNGNGVHK-MEKNGTNHTTKNPI--PSKIIVTPQENDE--AITKFHESMKNS 251

Query: 255 ASAVMPDLEDDRPTTAMPTNTRLQVAVVHSLDEGCLNLAIST 296
            + ++  ++ DR T A   + +L  A   + DE  L L  S+
Sbjct: 252 ENKIIRKIDVDRKTFAEEKHLKLMEA-CENQDEVLLKLLNSS 292


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.134    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,512,195
Number of Sequences: 27539
Number of extensions: 469938
Number of successful extensions: 1022
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1016
Number of HSP's gapped (non-prelim): 7
length of query: 482
length of database: 12,573,161
effective HSP length: 84
effective length of query: 398
effective length of database: 10,259,885
effective search space: 4083434230
effective search space used: 4083434230
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)