GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002763-TA|BGIBMGA002763-PA|IPR001208|MCM
         (276 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    22   4.4  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    22   5.8  

>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)

Query: 65  DEVFDRRLASHLVSLYYKDPNDPQ 88
           D V  RRL  HL S   +   +PQ
Sbjct: 128 DPVVKRRLLQHLASCLNQGQKEPQ 151


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 12/45 (26%), Positives = 23/45 (51%)

Query: 130 RRVGSGRGQISAYPRQLESLIRLAEAHARVRLSSVVELIDVDEAA 174
           R  G G+G+    PR + S ++L + + R + +  + L +  E A
Sbjct: 111 RPSGGGKGKKMRKPRTIYSSLQLQQLNRRFQRTQYLALPERAELA 155


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.133    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,047
Number of Sequences: 317
Number of extensions: 1827
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 2
length of query: 276
length of database: 114,650
effective HSP length: 56
effective length of query: 220
effective length of database: 96,898
effective search space: 21317560
effective search space used: 21317560
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)