GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002761-TA|BGIBMGA002761-PA|IPR012858|DC-STAMP-like
         (451 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces po...    28   3.1  
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz...    27   4.1  
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    27   5.4  
SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    27   5.4  
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch...    26   9.4  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   9.4  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    26   9.4  

>SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 16/65 (24%), Positives = 36/65 (55%), Gaps = 6/65 (9%)

Query: 71  TNMGLNAKEVVRVFGCSNELAYNLSTYKYTLLMNVIRKTA----LDMNIEVDRVKDSFRY 126
           +N GLN  + +++F   +++A  LS++     ++++ K A      +N+E   V+  FRY
Sbjct: 33  SNRGLNINQQLKLFNRRSKIA--LSSFIIPTSVDILVKVAGFQRYIVNVEFSNVQSYFRY 90

Query: 127 FKVVA 131
           +  ++
Sbjct: 91  YNYIS 95


>SPBC1306.01c ||SPBC409.22c|translation elongation factor
           G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 770

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 18/52 (34%), Positives = 24/52 (46%)

Query: 273 VYITGYFKMIDERRRISNKMHLLPLKKMERRKYIDIHSAALMTERSKLVTQV 324
           +Y TG  K I E R   N    +   ++ER K I I SAA      + V Q+
Sbjct: 80  LYYTGRIKDIHEVRGKDNVGAKMDFMELEREKGITIQSAATHCTWERTVDQI 131


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 9/84 (10%)

Query: 258 VTYHDLYLTNINHDNVYITGYFKMIDERR------RISNKMHLL--PLKKMERRKYIDIH 309
           V Y DL+LT++  +NV  TG +    + +       I NK++LL   +++    KY D H
Sbjct: 727 VDYLDLFLTSLKPENV-TTGMYSDTSKSQSQQSVTTIDNKVNLLCKIIREHLTSKYGDTH 785

Query: 310 SAALMTERSKLVTQVLKLALEMIT 333
             A++T         ++ AL MI+
Sbjct: 786 FQAIITSYLCESPPKIEAALGMIS 809


>SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 551

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 14/31 (45%), Positives = 17/31 (54%)

Query: 345 YEALDMVRRYADLEPRQGLRDLEIKVDGVGP 375
           +E L+ VR   DL P +  R L I V G GP
Sbjct: 234 FEILEQVRFNKDLSPEERARLLHITVVGGGP 264


>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 870

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 12/46 (26%), Positives = 25/46 (54%)

Query: 289 SNKMHLLPLKKMERRKYIDIHSAALMTERSKLVTQVLKLALEMITA 334
           + +  LL  ++ ERR+YI+  S  L  + +++  Q  K  ++  T+
Sbjct: 466 NKEFQLLRAEREERRRYIETSSRELEDKDAEIAAQAYKAKVDQDTS 511


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 16/60 (26%), Positives = 26/60 (43%)

Query: 272  NVYITGYFKMIDERRRISNKMHLLPLKKMERRKYIDIHSAALMTERSKLVTQVLKLALEM 331
            N  ++G+F++ D      +   LL L        +   SA  M+E SK +   LK   +M
Sbjct: 1029 NETVSGFFRLSDRDPLSKSNRVLLALSSTLLNLILVFTSADFMSETSKTLNMALKSEFDM 1088


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 13/34 (38%), Positives = 21/34 (61%)

Query: 315 TERSKLVTQVLKLALEMITATTFVMMDRMFYEAL 348
           TER++L + +LK  L +   + F   +R+FYE L
Sbjct: 911 TERAQLASFLLKEFLNLKNGSHFEGYERVFYELL 944


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.137    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,675,669
Number of Sequences: 5004
Number of extensions: 60604
Number of successful extensions: 172
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 166
Number of HSP's gapped (non-prelim): 9
length of query: 451
length of database: 2,362,478
effective HSP length: 75
effective length of query: 376
effective length of database: 1,987,178
effective search space: 747178928
effective search space used: 747178928
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 55 (26.2 bits)