GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002761-TA|BGIBMGA002761-PA|IPR012858|DC-STAMP-like
         (451 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016442-3|AAB65917.2|  597|Caenorhabditis elegans Hypothetical ...    35   0.10 
Z74026-4|CAA98416.5|  774|Caenorhabditis elegans Hypothetical pr...    35   0.14 
Z73103-9|CAJ43433.1|  719|Caenorhabditis elegans Hypothetical pr...    29   6.7  
Z73103-8|CAA97429.1|  721|Caenorhabditis elegans Hypothetical pr...    29   6.7  
AC024805-5|AAK39339.1|  494|Caenorhabditis elegans Hypothetical ...    29   6.7  
AC024805-4|ABA00170.1|  318|Caenorhabditis elegans Hypothetical ...    29   6.7  
AC024805-3|AAK39338.1|  801|Caenorhabditis elegans Hypothetical ...    29   6.7  

>AF016442-3|AAB65917.2|  597|Caenorhabditis elegans Hypothetical
           protein K12B6.2 protein.
          Length = 597

 Score = 35.1 bits (77), Expect = 0.10
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 264 YLTNINHDNVYITGYFKMIDERRRISNKMHLLPLKKMERRKY--IDIHSAALMTERSKLV 321
           Y  ++   N ++T  F MID  R+   + HL    K E+R++  +++ S     ERSK V
Sbjct: 398 YQEDVAFSNSFVTKEFWMIDRFRQARGQTHLSHFSKQEKREWRVMEVFSLPTKAERSKAV 457


>Z74026-4|CAA98416.5|  774|Caenorhabditis elegans Hypothetical
           protein B0240.2 protein.
          Length = 774

 Score = 34.7 bits (76), Expect = 0.14
 Identities = 29/132 (21%), Positives = 51/132 (38%), Gaps = 3/132 (2%)

Query: 259 TYHDLYLTNINHD--NVYITGYFKMIDERRRISNKMHLLPLKKMERRKYIDIHSAALM-T 315
           T   +Y  N N D  N ++T  F  ID+         ++PL   E ++Y+      +   
Sbjct: 433 TLRFMYNYNYNDDFKNRFLTKEFTKIDQDCAFRGARKVMPLMANESKQYVSRGQWKMTEQ 492

Query: 316 ERSKLVTQVLKLALEMITATTFVMMDRMFYEALDMVRRYADLEPRQGLRDLEIKVDGVGP 375
           ER K    +    +  +T     M+D   +  L  V    +          E+KV G   
Sbjct: 493 ERPKFRLDIFITIVSCVTPFFMCMLDYGIFTTLSTVHTLMNRTNIDTPAHYELKVAGNSS 552

Query: 376 ISAILRKFFESF 387
           +S ++ +F + F
Sbjct: 553 MSDVMNEFLDVF 564


>Z73103-9|CAJ43433.1|  719|Caenorhabditis elegans Hypothetical
           protein C08F8.2b protein.
          Length = 719

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 14/59 (23%), Positives = 31/59 (52%)

Query: 185 MKLIEYEFTKRIRRVKLQCEPRTGQDNVFIKDARKTNEDIGISFEEKTSIMRLVVTMMN 243
           +KL+  E   R   + + C+  TG++  F KD    ++ +  + E  ++ MR+ V +++
Sbjct: 220 LKLLAAEVFHRTNELGIPCDLVTGEERRFAKDNHHPSQHLSSTVEMLSTQMRVEVAVID 278


>Z73103-8|CAA97429.1|  721|Caenorhabditis elegans Hypothetical
           protein C08F8.2a protein.
          Length = 721

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 14/59 (23%), Positives = 31/59 (52%)

Query: 185 MKLIEYEFTKRIRRVKLQCEPRTGQDNVFIKDARKTNEDIGISFEEKTSIMRLVVTMMN 243
           +KL+  E   R   + + C+  TG++  F KD    ++ +  + E  ++ MR+ V +++
Sbjct: 222 LKLLAAEVFHRTNELGIPCDLVTGEERRFAKDNHHPSQHLSSTVEMLSTQMRVEVAVID 280


>AC024805-5|AAK39339.1|  494|Caenorhabditis elegans Hypothetical
           protein Y51H7C.6b protein.
          Length = 494

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 15/55 (27%), Positives = 29/55 (52%)

Query: 189 EYEFTKRIRRVKLQCEPRTGQDNVFIKDARKTNEDIGISFEEKTSIMRLVVTMMN 243
           +++FT++IR ++L+ E +  ++    KD     E+  I   E+     L VT +N
Sbjct: 35  QFDFTRKIRELRLELEIKKREEERIEKDIAIILEENTIDGGEQNRSFGLAVTRLN 89


>AC024805-4|ABA00170.1|  318|Caenorhabditis elegans Hypothetical
           protein Y51H7C.6c protein.
          Length = 318

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 15/55 (27%), Positives = 29/55 (52%)

Query: 189 EYEFTKRIRRVKLQCEPRTGQDNVFIKDARKTNEDIGISFEEKTSIMRLVVTMMN 243
           +++FT++IR ++L+ E +  ++    KD     E+  I   E+     L VT +N
Sbjct: 35  QFDFTRKIRELRLELEIKKREEERIEKDIAIILEENTIDGGEQNRSFGLAVTRLN 89


>AC024805-3|AAK39338.1|  801|Caenorhabditis elegans Hypothetical
           protein Y51H7C.6a protein.
          Length = 801

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 15/55 (27%), Positives = 29/55 (52%)

Query: 189 EYEFTKRIRRVKLQCEPRTGQDNVFIKDARKTNEDIGISFEEKTSIMRLVVTMMN 243
           +++FT++IR ++L+ E +  ++    KD     E+  I   E+     L VT +N
Sbjct: 35  QFDFTRKIRELRLELEIKKREEERIEKDIAIILEENTIDGGEQNRSFGLAVTRLN 89


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.324    0.137    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,981,777
Number of Sequences: 27539
Number of extensions: 326003
Number of successful extensions: 855
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 848
Number of HSP's gapped (non-prelim): 8
length of query: 451
length of database: 12,573,161
effective HSP length: 84
effective length of query: 367
effective length of database: 10,259,885
effective search space: 3765377795
effective search space used: 3765377795
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 61 (28.7 bits)