GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002760-TA|BGIBMGA002760-PA|IPR001394|Peptidase C19,
ubiquitin carboxyl-terminal hydrolase 2
         (125 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   3.5  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   3.5  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   4.6  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    20   6.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    20   8.1  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 12/49 (24%), Positives = 17/49 (34%)

Query: 59  WLRCXXXXXXXXXXXXXLKLSGGGDWHCAYLLLYGPKILELPEQDEDEP 107
           WL C             +K     D +  Y+  Y P +  +P Q   EP
Sbjct: 412 WLSCSSFFQQFFHCYCPIKFGRKADPNGDYIRKYLPVLKNMPSQYIHEP 460


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 7/13 (53%), Positives = 11/13 (84%)

Query: 101 EQDEDEPMVTDIT 113
           E+DED+P V+ +T
Sbjct: 905 EEDEDKPSVSPLT 917


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 92  YGPKILELPEQDEDEPMVTD 111
           +GP I+ +PE+D     + D
Sbjct: 190 FGPFIVRVPEEDNPHAKLYD 209


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 20.2 bits (40), Expect = 6.1
 Identities = 9/30 (30%), Positives = 13/30 (43%)

Query: 2   ACVMGSKDPATPAEGRCVCADVGSNNSGYY 31
           +C    K   TP +   +C   G   SGY+
Sbjct: 170 SCDSKKKKGPTPRQQEELCLVCGDRASGYH 199


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 19.8 bits (39), Expect = 8.1
 Identities = 7/24 (29%), Positives = 13/24 (54%)

Query: 99   LPEQDEDEPMVTDITDDPAGEPPT 122
            +P  DE+ P V  + ++    PP+
Sbjct: 1775 IPPIDEEPPSVEAVEEEREEAPPS 1798


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.136    0.446 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,537
Number of Sequences: 317
Number of extensions: 1092
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 125
length of database: 114,650
effective HSP length: 50
effective length of query: 75
effective length of database: 98,800
effective search space:  7410000
effective search space used:  7410000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.7 bits)
S2: 39 (19.8 bits)