GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002760-TA|BGIBMGA002760-PA|IPR001394|Peptidase C19,
ubiquitin carboxyl-terminal hydrolase 2
         (125 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc...    58   5e-10
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch...    35   0.004
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo...    32   0.023
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc...    31   0.054
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    26   1.5  

>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
           Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 57.6 bits (133), Expect = 5e-10
 Identities = 31/77 (40%), Positives = 38/77 (49%), Gaps = 3/77 (3%)

Query: 22  DVGSNNSGYYRLQAVLTHRGRSSSSGHYVAWVARG---AGWLRCXXXXXXXXXXXXXLKL 78
           D G+N +G Y L  VL+H G S+SSGHY AW+      A W R                L
Sbjct: 388 DEGANPTGLYDLVGVLSHAGASASSGHYQAWIRNSNNRAEWFRFNDAKVSIVPAEKIETL 447

Query: 79  SGGGDWHCAYLLLYGPK 95
            GGG+   AY+LLY  K
Sbjct: 448 DGGGEADSAYILLYKAK 464


>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
           Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 34.7 bits (76), Expect = 0.004
 Identities = 11/25 (44%), Positives = 21/25 (84%)

Query: 31  YRLQAVLTHRGRSSSSGHYVAWVAR 55
           Y L+A+++H+G S+ +GHYVA++ +
Sbjct: 713 YNLKAIISHKGSSAHAGHYVAFIRK 737


>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
           Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 457

 Score = 32.3 bits (70), Expect = 0.023
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 26  NNSGYYRLQAVLTHRGRSSSSGHYVAWVARGAG-WLR 61
           N S +Y L  VL H G S+ SGHY ++     G WL+
Sbjct: 366 NCSCWYELIGVLVHAGGSTRSGHYYSFCKSSNGVWLK 402


>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
           Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 31.1 bits (67), Expect = 0.054
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 31  YRLQAVLTHRGRSSSSGHYVAWVAR--GAGWLR 61
           Y L AV+ H G S+S GHY   V +   +GW R
Sbjct: 436 YDLNAVVYHHGTSASGGHYTVDVQQLDKSGWFR 468


>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 26  NNSGYYRLQAVLTHRGRSSSSGHYVAWV-ARGAGWL 60
           N    Y L +V+ H G     GHYV+ V  +  GW+
Sbjct: 353 NAERMYYLSSVIVHVGGGPHRGHYVSIVRTKTYGWV 388


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.136    0.446 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 586,565
Number of Sequences: 5004
Number of extensions: 18779
Number of successful extensions: 39
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33
Number of HSP's gapped (non-prelim): 5
length of query: 125
length of database: 2,362,478
effective HSP length: 65
effective length of query: 60
effective length of database: 2,037,218
effective search space: 122233080
effective search space used: 122233080
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 49 (23.8 bits)