Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002760-TA|BGIBMGA002760-PA|IPR001394|Peptidase C19,
ubiquitin carboxyl-terminal hydrolase 2
(125 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0297 - 20578031-20578080,20578162-20578236,20578317-205784... 75 2e-14
01_01_0543 + 3985771-3985866,3985965-3986145,3986668-3986780,398... 38 0.003
08_02_1345 - 26286448-26286679,26287483-26288038,26288068-262883... 34 0.029
08_02_1344 - 26280554-26280785,26281558-26282182,26282718-26284224 33 0.051
03_01_0658 + 4818401-4818540,4818605-4819201,4819694-4819949,482... 33 0.051
08_02_1338 - 26244928-26245159,26246420-26247374,26247921-26249187 32 0.12
07_03_1573 + 27829967-27830338,27830821-27831510,27831594-278317... 32 0.15
02_04_0319 - 22006550-22006952,22007260-22007441,22007522-220077... 31 0.20
08_02_1342 - 26268552-26268783,26270213-26271137,26271680-26272907 30 0.47
08_02_1335 - 26226784-26227015,26227493-26228474,26229021-26230686 30 0.47
12_02_1151 + 26488686-26488792,26488897-26489142,26490246-264903... 30 0.63
09_04_0652 - 19227686-19227926,19229368-19232294 30 0.63
04_04_1365 - 32967604-32968367,32969097-32969221,32969583-32969632 30 0.63
06_01_0588 - 4224348-4224516,4224674-4224767,4224872-4225490,422... 29 0.83
03_01_0641 - 4697273-4697672,4697921-4698102,4698218-4698403,469... 29 0.83
02_05_1059 + 33815979-33816235,33816467-33816732,33817149-338171... 29 0.83
11_01_0749 - 6305087-6307522 29 1.1
05_06_0033 + 25074301-25074393,25074680-25075203,25076367-250764... 29 1.1
04_03_0785 + 19619062-19619532,19620047-19621012 29 1.4
08_02_1343 - 26274788-26275019,26275972-26276611,26277174-262783... 28 1.9
08_02_1336 - 26233081-26233312,26233814-26234672,26235218-26236736 28 1.9
04_04_0075 - 22542486-22542882,22543181-22543362,22543452-225436... 28 1.9
08_02_1340 - 26256768-26256999,26258105-26258774,26259273-262605... 27 3.3
>01_05_0297 -
20578031-20578080,20578162-20578236,20578317-20578416,
20578476-20578535,20578833-20578907,20578989-20579069,
20579596-20579665,20579769-20579833,20580008-20580116,
20580812-20580876,20580964-20581023,20582008-20582134,
20582215-20582315,20583209-20583316,20583429-20583464,
20583569-20583714,20585555-20585564
Length = 445
Score = 74.5 bits (175), Expect = 2e-14
Identities = 34/71 (47%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 28 SGYYRLQAVLTHRGRSSSSGHYVAWVARGAG-WLRCXXXXXXXXXXXXXLKLSGGGDWHC 86
+G Y L AVLTH+GRS+ SGHYV WV + G W+ LKLSGGGDWH
Sbjct: 375 TGIYDLIAVLTHKGRSADSGHYVGWVKQDDGKWIEFDDDNPSIRKEEEILKLSGGGDWHM 434
Query: 87 AYLLLYGPKIL 97
AY+ LY +++
Sbjct: 435 AYICLYKARVI 445
>01_01_0543 +
3985771-3985866,3985965-3986145,3986668-3986780,
3986854-3987190,3987602-3987603,3987661-3987743,
3988017-3988116,3988330-3988463,3988711-3988788,
3989333-3989387,3990159-3990239,3990369-3990567,
3990609-3990699,3990770-3990892,3991440-3991528,
3992450-3992539,3992619-3992792,3992911-3993035,
3993246-3993372,3993826-3993998
Length = 816
Score = 37.5 bits (83), Expect = 0.003
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 26 NNSGYYRLQAVLTHRGRSSSSGHYVAWVARGAGWL 60
+ SG Y+L A ++H G S+ GHYVA V + W+
Sbjct: 756 DGSGRYKLMAFVSHMGTSTHCGHYVAHVLKDGRWV 790
>08_02_1345 -
26286448-26286679,26287483-26288038,26288068-26288358,
26288953-26290516
Length = 880
Score = 34.3 bits (75), Expect = 0.029
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 27 NSGYYRLQAVLTHRGRSSSSGHYVAWV 53
++ YRL V+ H GR SGH+VA+V
Sbjct: 809 DNSIYRLAGVIEHHGRGKDSGHFVAYV 835
>08_02_1344 - 26280554-26280785,26281558-26282182,26282718-26284224
Length = 787
Score = 33.5 bits (73), Expect = 0.051
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 21 ADVGSNNSGYYRLQAVLTHRGRSSSSGHYVAWV 53
+ V +NS YRL +V+ H G SGH+VA+V
Sbjct: 711 SSVDKDNS-IYRLASVIEHHGHGKDSGHFVAYV 742
>03_01_0658 +
4818401-4818540,4818605-4819201,4819694-4819949,
4820038-4820723,4821009-4821147,4821378-4821514,
4821805-4822077,4822175-4822382,4822660-4822731,
4823230-4823460,4824269-4824532,4825127-4825268,
4825355-4825467
Length = 1085
Score = 33.5 bits (73), Expect = 0.051
Identities = 15/28 (53%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Query: 27 NSGY-YRLQAVLTHRGRSSSSGHYVAWV 53
+S Y Y L A+L H+G +++SGHYVA V
Sbjct: 358 SSSYTYGLSAILIHKGSAANSGHYVAHV 385
>08_02_1338 - 26244928-26245159,26246420-26247374,26247921-26249187
Length = 817
Score = 32.3 bits (70), Expect = 0.12
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 31 YRLQAVLTHRGRSSSSGHYVAWV 53
YRL V+ H G S SGHYVA+V
Sbjct: 750 YRLVGVVEHLGHSMYSGHYVAYV 772
>07_03_1573 +
27829967-27830338,27830821-27831510,27831594-27831781,
27832286-27832318,27832364-27832605,27833178-27833320,
27833649-27833825,27834104-27834256,27834639-27834694,
27834998-27835157,27835301-27835348
Length = 753
Score = 31.9 bits (69), Expect = 0.15
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 31 YRLQAVLTHRGRSSSSGHYVAWVARGAG-WLR 61
Y L A +TH G + S GHY A +G WLR
Sbjct: 622 YELVATITHLGANPSRGHYTADAKSASGQWLR 653
>02_04_0319 -
22006550-22006952,22007260-22007441,22007522-22007704,
22008144-22008242,22008999-22009115,22010476-22010739
Length = 415
Score = 31.5 bits (68), Expect = 0.20
Identities = 16/56 (28%), Positives = 20/56 (35%)
Query: 31 YRLQAVLTHRGRSSSSGHYVAWVARGAGWLRCXXXXXXXXXXXXXLKLSGGGDWHC 86
Y L AV+ H G S + GHYV+ + WL G HC
Sbjct: 341 YSLFAVVVHVGSSPNHGHYVSQIKSHGNWLSFDDDTVQISEESTLQTFYGSSREHC 396
>08_02_1342 - 26268552-26268783,26270213-26271137,26271680-26272907
Length = 794
Score = 30.3 bits (65), Expect = 0.47
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 31 YRLQAVLTHRGRSSSSGHYVAWV 53
YRL V+ HRG + +GH++A+V
Sbjct: 727 YRLVGVVEHRGLGNDAGHFLAYV 749
>08_02_1335 - 26226784-26227015,26227493-26228474,26229021-26230686
Length = 959
Score = 30.3 bits (65), Expect = 0.47
Identities = 15/28 (53%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 26 NNSGYYRLQAVLTHRGRSSSSGHYVAWV 53
+NS Y+ L V+ H G S+SSGH VA+V
Sbjct: 888 DNSSYH-LVGVIEHIGPSTSSGHMVAYV 914
>12_02_1151 +
26488686-26488792,26488897-26489142,26490246-26490381,
26490502-26490561,26490648-26490740,26491421-26491663,
26491828-26491968,26492312-26492482,26492813-26492899,
26492954-26493211,26493300-26493445,26493535-26493922,
26493935-26494092,26494267-26494540,26494721-26494894
Length = 893
Score = 29.9 bits (64), Expect = 0.63
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 24 GSNNSGYYRLQAVLTHRGRSSSSGHYVAWV 53
G S +YRL A+ H G S GHY A+V
Sbjct: 807 GQQISNHYRLYAISNHYG-SMGGGHYTAYV 835
>09_04_0652 - 19227686-19227926,19229368-19232294
Length = 1055
Score = 29.9 bits (64), Expect = 0.63
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 26 NNSGYYRLQAVLTHRGRSSSSGHYVAWVARG 56
N++ YRL V+ H G + ++GHYVA+V G
Sbjct: 980 NDNTTYRLVGVVEHLG-TMAAGHYVAYVRTG 1009
>04_04_1365 - 32967604-32968367,32969097-32969221,32969583-32969632
Length = 312
Score = 29.9 bits (64), Expect = 0.63
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 21 ADVGSNNSGYYRLQAVLTHRGRSSSSGHYVAWVARGAGWLRC 62
AD S S + + AV+ H G+ + GHYV ++ W +C
Sbjct: 233 ADSVSEFSSEFEIFAVIMHSGKLEA-GHYVTYLRLNNHWYKC 273
>06_01_0588 -
4224348-4224516,4224674-4224767,4224872-4225490,
4225609-4225734,4225819-4226487,4226728-4226853,
4226940-4227266,4227366-4227439,4228469-4228583,
4228871-4229164
Length = 870
Score = 29.5 bits (63), Expect = 0.83
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 31 YRLQAVLTHRGRSSSSGHYVAWVARGAG 58
Y L VL H G ++ SGHY +V +G
Sbjct: 276 YSLYGVLVHAGWNTQSGHYYCFVRTSSG 303
>03_01_0641 -
4697273-4697672,4697921-4698102,4698218-4698403,
4699287-4699385,4700028-4700144,4700698-4700814
Length = 366
Score = 29.5 bits (63), Expect = 0.83
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 26 NNSGYYRLQAVLTHRGRSSSSGHYVAWVARGAGWL 60
N+ Y L AVL H G + GHY++ V WL
Sbjct: 288 NSDLEYSLFAVLVHVGSGPNHGHYISLVKSHNHWL 322
>02_05_1059 +
33815979-33816235,33816467-33816732,33817149-33817192,
33817363-33817539,33817638-33817964,33818067-33818192,
33818518-33818622,33818815-33820125,33820221-33820382,
33820416-33820517,33820549-33821272,33821358-33821451,
33821824-33821986
Length = 1285
Score = 29.5 bits (63), Expect = 0.83
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 31 YRLQAVLTHRGRSSSSGHYVAWVARGAG 58
Y L VL H G ++ SGHY +V +G
Sbjct: 363 YSLYGVLVHAGWNTQSGHYYCFVRTSSG 390
>11_01_0749 - 6305087-6307522
Length = 811
Score = 29.1 bits (62), Expect = 1.1
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 14 AEGRCVCADVGSN-NSGYYRLQAVLTHRGRSSSSGHYVAWVARGAG 58
A GRC+C D N ++ G+SSS + WVA AG
Sbjct: 358 ASGRCICVDCAFELNVATPNASSLGPGPGKSSSKRSRIIWVAVAAG 403
>05_06_0033 +
25074301-25074393,25074680-25075203,25076367-25076442,
25076549-25076641,25077167-25077253,25077338-25078095,
25078447-25078575,25079145-25079265
Length = 626
Score = 29.1 bits (62), Expect = 1.1
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 31 YRLQAVLTHRGRSSSSGHYVAWVARGAG-WLRC 62
Y L + H G S SGHY A+V G W C
Sbjct: 268 YNLFGSIVHSGFSPDSGHYYAYVKDAIGRWYCC 300
>04_03_0785 + 19619062-19619532,19620047-19621012
Length = 478
Score = 28.7 bits (61), Expect = 1.4
Identities = 12/17 (70%), Positives = 12/17 (70%)
Query: 98 ELPEQDEDEPMVTDITD 114
ELPEQDED PMV D
Sbjct: 317 ELPEQDEDSPMVPQSMD 333
>08_02_1343 -
26274788-26275019,26275972-26276611,26277174-26278367,
26278515-26278701
Length = 750
Score = 28.3 bits (60), Expect = 1.9
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 31 YRLQAVLTHRGRSSSSGHYVAWV 53
YRL + H G S +GHYVA+V
Sbjct: 683 YRLVGFVEHLGPSMYAGHYVAYV 705
>08_02_1336 - 26233081-26233312,26233814-26234672,26235218-26236736
Length = 869
Score = 28.3 bits (60), Expect = 1.9
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 26 NNSGYYRLQAVLTHRGRSSSSGHYVAWV 53
+NS Y+ L V+ H G S+ SGH VA+V
Sbjct: 798 DNSSYH-LVGVIEHIGPSTRSGHMVAYV 824
>04_04_0075 -
22542486-22542882,22543181-22543362,22543452-22543637,
22543959-22544057,22546198-22546314,22547739-22547855
Length = 365
Score = 28.3 bits (60), Expect = 1.9
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 31 YRLQAVLTHRGRSSSSGHYVAWVARGAGWL 60
Y L AV+ H G + GHYV+ V WL
Sbjct: 292 YSLFAVVVHVGSGPNHGHYVSLVKSHNHWL 321
>08_02_1340 - 26256768-26256999,26258105-26258774,26259273-26260555,
26262403-26263499
Length = 1093
Score = 27.5 bits (58), Expect = 3.3
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 31 YRLQAVLTHRGRSSSSGHYVAWV 53
YRL V+ H G +GH+VA+V
Sbjct: 1026 YRLVGVVEHLGLCMDAGHFVAYV 1048
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.136 0.446
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,635,434
Number of Sequences: 37544
Number of extensions: 186629
Number of successful extensions: 335
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 314
Number of HSP's gapped (non-prelim): 23
length of query: 125
length of database: 14,793,348
effective HSP length: 74
effective length of query: 51
effective length of database: 12,015,092
effective search space: 612769692
effective search space used: 612769692
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 55 (26.2 bits)
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