Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002760-TA|BGIBMGA002760-PA|IPR001394|Peptidase C19,
ubiquitin carboxyl-terminal hydrolase 2
(125 letters)
Database: fruitfly
52,641 sequences; 24,830,863 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE014134-1832|AAF52908.1| 475|Drosophila melanogaster CG5384-PA... 108 2e-24
AY121697-1|AAM52024.1| 827|Drosophila melanogaster RE70722p pro... 36 0.020
AE014296-568|AAF47720.1| 827|Drosophila melanogaster CG12082-PA... 36 0.020
BT001496-1|AAN71251.1| 1078|Drosophila melanogaster LD32685p pro... 33 0.083
AF181650-1|AAD55436.1| 1078|Drosophila melanogaster BcDNA.LD2291... 33 0.083
AE014297-4360|AAN14167.1| 1078|Drosophila melanogaster CG15817-P... 33 0.083
AE014297-4359|AAF56881.1| 1084|Drosophila melanogaster CG15817-P... 33 0.083
AY122170-1|AAM52682.1| 1517|Drosophila melanogaster LD28815p pro... 31 0.44
AE014296-151|AAF47426.2| 1517|Drosophila melanogaster CG32479-PA... 31 0.44
BT010235-1|AAQ23553.1| 424|Drosophila melanogaster RE52890p pro... 29 2.3
AE014297-3238|AAN13921.1| 364|Drosophila melanogaster CG7023-PA... 29 2.3
AE014297-3237|AAF56066.1| 424|Drosophila melanogaster CG7023-PB... 29 2.3
BT010120-1|AAQ22589.1| 948|Drosophila melanogaster AT24152p pro... 28 3.1
BT004507-1|AAO42671.1| 1038|Drosophila melanogaster AT31021p pro... 28 3.1
AY051916-1|AAK93340.1| 968|Drosophila melanogaster LD40339p pro... 28 3.1
AE014296-1003|AAN12111.1| 968|Drosophila melanogaster CG5505-PB... 28 3.1
AE014296-1002|AAN12110.1| 1015|Drosophila melanogaster CG5505-PE... 28 3.1
AE014296-1001|AAN12109.1| 948|Drosophila melanogaster CG5505-PC... 28 3.1
AE014296-1000|AAN12108.1| 995|Drosophila melanogaster CG5505-PF... 28 3.1
AE014296-999|AAN12107.1| 1038|Drosophila melanogaster CG5505-PD,... 28 3.1
AE014296-998|AAF50748.2| 1085|Drosophila melanogaster CG5505-PA,... 28 3.1
AY051896-1|AAK93320.1| 1420|Drosophila melanogaster LD38533p pro... 28 4.1
AF241364-1|AAF98386.1| 507|Drosophila melanogaster cleavage and... 28 4.1
AE013599-1901|AAF58240.1| 1455|Drosophila melanogaster CG10110-P... 28 4.1
AE013599-1900|AAM68553.1| 1420|Drosophila melanogaster CG10110-P... 28 4.1
BT010041-1|AAQ22510.1| 852|Drosophila melanogaster LD36231p pro... 27 9.5
AE013599-1490|AAM68683.1| 852|Drosophila melanogaster CG8830-PB... 27 9.5
AE013599-1489|AAF58508.1| 852|Drosophila melanogaster CG8830-PA... 27 9.5
>AE014134-1832|AAF52908.1| 475|Drosophila melanogaster CG5384-PA
protein.
Length = 475
Score = 108 bits (259), Expect = 2e-24
Identities = 49/78 (62%), Positives = 56/78 (71%), Gaps = 1/78 (1%)
Query: 22 DVGSNNSGYYRLQAVLTHRGRSSSSGHYVAWV-ARGAGWLRCXXXXXXXXXXXXXLKLSG 80
D+GSNNSGYY LQAVLTH+GRSSSSGHYVAWV + G W + L+LSG
Sbjct: 396 DLGSNNSGYYTLQAVLTHKGRSSSSGHYVAWVRSSGDVWFKFDDDEVSAVATDEILRLSG 455
Query: 81 GGDWHCAYLLLYGPKILE 98
GGDWHCAY+LLY P+ LE
Sbjct: 456 GGDWHCAYVLLYAPRRLE 473
>AY121697-1|AAM52024.1| 827|Drosophila melanogaster RE70722p
protein.
Length = 827
Score = 35.5 bits (78), Expect = 0.020
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 5 MGSKDPATPAEGRCVCADVGSNNSGY------YRLQAVLTHRGRSSSSGHYVAWVARGAG 58
+G +D A A A N + Y YRL A ++H G S+ GHYV + +
Sbjct: 739 IGVEDAAPAANSSAAAASSTPNKTNYRDGRGKYRLVAFISHMGTSAQVGHYVCHIRKKGE 798
Query: 59 WL 60
W+
Sbjct: 799 WV 800
>AE014296-568|AAF47720.1| 827|Drosophila melanogaster CG12082-PA
protein.
Length = 827
Score = 35.5 bits (78), Expect = 0.020
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 5 MGSKDPATPAEGRCVCADVGSNNSGY------YRLQAVLTHRGRSSSSGHYVAWVARGAG 58
+G +D A A A N + Y YRL A ++H G S+ GHYV + +
Sbjct: 739 IGVEDAAPAANSSAAAASSTPNKTNYRDGRGKYRLVAFISHMGTSAQVGHYVCHIRKKGE 798
Query: 59 WL 60
W+
Sbjct: 799 WV 800
>BT001496-1|AAN71251.1| 1078|Drosophila melanogaster LD32685p
protein.
Length = 1078
Score = 33.5 bits (73), Expect = 0.083
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 20 CADVGSNNSGY-YRLQAVLTHRGRSSSSGHYVAW 52
C ++G N + Y+L +V+TH G + + GHY+A+
Sbjct: 782 CCELGEGNKLHVYKLYSVITHVGATLTVGHYIAY 815
>AF181650-1|AAD55436.1| 1078|Drosophila melanogaster BcDNA.LD22910
protein.
Length = 1078
Score = 33.5 bits (73), Expect = 0.083
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 20 CADVGSNNSGY-YRLQAVLTHRGRSSSSGHYVAW 52
C ++G N + Y+L +V+TH G + + GHY+A+
Sbjct: 782 CCELGEGNKLHVYKLYSVITHVGATLTVGHYIAY 815
>AE014297-4360|AAN14167.1| 1078|Drosophila melanogaster CG15817-PA,
isoform A protein.
Length = 1078
Score = 33.5 bits (73), Expect = 0.083
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 20 CADVGSNNSGY-YRLQAVLTHRGRSSSSGHYVAW 52
C ++G N + Y+L +V+TH G + + GHY+A+
Sbjct: 782 CCELGEGNKLHVYKLYSVITHVGATLTVGHYIAY 815
>AE014297-4359|AAF56881.1| 1084|Drosophila melanogaster CG15817-PB,
isoform B protein.
Length = 1084
Score = 33.5 bits (73), Expect = 0.083
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 20 CADVGSNNSGY-YRLQAVLTHRGRSSSSGHYVAW 52
C ++G N + Y+L +V+TH G + + GHY+A+
Sbjct: 788 CCELGEGNKLHVYKLYSVITHVGATLTVGHYIAY 821
>AY122170-1|AAM52682.1| 1517|Drosophila melanogaster LD28815p protein.
Length = 1517
Score = 31.1 bits (67), Expect = 0.44
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 31 YRLQAVLTHRGRSSSSGHYVAWVARG--AGWLR 61
YRL AV+ H G+ +S GHY+ V + WLR
Sbjct: 1419 YRLFAVVYHDGKEASKGHYITDVFHTGYSSWLR 1451
>AE014296-151|AAF47426.2| 1517|Drosophila melanogaster CG32479-PA
protein.
Length = 1517
Score = 31.1 bits (67), Expect = 0.44
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 31 YRLQAVLTHRGRSSSSGHYVAWVARG--AGWLR 61
YRL AV+ H G+ +S GHY+ V + WLR
Sbjct: 1419 YRLFAVVYHDGKEASKGHYITDVFHTGYSSWLR 1451
>BT010235-1|AAQ23553.1| 424|Drosophila melanogaster RE52890p
protein.
Length = 424
Score = 28.7 bits (61), Expect = 2.3
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 21 ADVGSNNSGYYRLQAVLTHRGRSSSSGHYVAWVARGAGWL 60
+D N Y L AV+ H G + GHY++ V WL
Sbjct: 342 SDDAVNPDRLYDLTAVVIHCGSGPNRGHYISIVKSHGLWL 381
>AE014297-3238|AAN13921.1| 364|Drosophila melanogaster CG7023-PA,
isoform A protein.
Length = 364
Score = 28.7 bits (61), Expect = 2.3
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 21 ADVGSNNSGYYRLQAVLTHRGRSSSSGHYVAWVARGAGWL 60
+D N Y L AV+ H G + GHY++ V WL
Sbjct: 282 SDDAVNPDRLYDLTAVVIHCGSGPNRGHYISIVKSHGLWL 321
>AE014297-3237|AAF56066.1| 424|Drosophila melanogaster CG7023-PB,
isoform B protein.
Length = 424
Score = 28.7 bits (61), Expect = 2.3
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 21 ADVGSNNSGYYRLQAVLTHRGRSSSSGHYVAWVARGAGWL 60
+D N Y L AV+ H G + GHY++ V WL
Sbjct: 342 SDDAVNPDRLYDLTAVVIHCGSGPNRGHYISIVKSHGLWL 381
>BT010120-1|AAQ22589.1| 948|Drosophila melanogaster AT24152p
protein.
Length = 948
Score = 28.3 bits (60), Expect = 3.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 31 YRLQAVLTHRGRSSSSGHYVA 51
YRL +++TH G S GHY A
Sbjct: 332 YRLVSMVTHLGASQHCGHYTA 352
>BT004507-1|AAO42671.1| 1038|Drosophila melanogaster AT31021p
protein.
Length = 1038
Score = 28.3 bits (60), Expect = 3.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 31 YRLQAVLTHRGRSSSSGHYVA 51
YRL +++TH G S GHY A
Sbjct: 422 YRLVSMVTHLGASQHCGHYTA 442
>AY051916-1|AAK93340.1| 968|Drosophila melanogaster LD40339p
protein.
Length = 968
Score = 28.3 bits (60), Expect = 3.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 31 YRLQAVLTHRGRSSSSGHYVA 51
YRL +++TH G S GHY A
Sbjct: 352 YRLVSMVTHLGASQHCGHYTA 372
>AE014296-1003|AAN12111.1| 968|Drosophila melanogaster CG5505-PB,
isoform B protein.
Length = 968
Score = 28.3 bits (60), Expect = 3.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 31 YRLQAVLTHRGRSSSSGHYVA 51
YRL +++TH G S GHY A
Sbjct: 352 YRLVSMVTHLGASQHCGHYTA 372
>AE014296-1002|AAN12110.1| 1015|Drosophila melanogaster CG5505-PE,
isoform E protein.
Length = 1015
Score = 28.3 bits (60), Expect = 3.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 31 YRLQAVLTHRGRSSSSGHYVA 51
YRL +++TH G S GHY A
Sbjct: 352 YRLVSMVTHLGASQHCGHYTA 372
>AE014296-1001|AAN12109.1| 948|Drosophila melanogaster CG5505-PC,
isoform C protein.
Length = 948
Score = 28.3 bits (60), Expect = 3.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 31 YRLQAVLTHRGRSSSSGHYVA 51
YRL +++TH G S GHY A
Sbjct: 332 YRLVSMVTHLGASQHCGHYTA 352
>AE014296-1000|AAN12108.1| 995|Drosophila melanogaster CG5505-PF,
isoform F protein.
Length = 995
Score = 28.3 bits (60), Expect = 3.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 31 YRLQAVLTHRGRSSSSGHYVA 51
YRL +++TH G S GHY A
Sbjct: 332 YRLVSMVTHLGASQHCGHYTA 352
>AE014296-999|AAN12107.1| 1038|Drosophila melanogaster CG5505-PD,
isoform D protein.
Length = 1038
Score = 28.3 bits (60), Expect = 3.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 31 YRLQAVLTHRGRSSSSGHYVA 51
YRL +++TH G S GHY A
Sbjct: 422 YRLVSMVTHLGASQHCGHYTA 442
>AE014296-998|AAF50748.2| 1085|Drosophila melanogaster CG5505-PA,
isoform A protein.
Length = 1085
Score = 28.3 bits (60), Expect = 3.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 31 YRLQAVLTHRGRSSSSGHYVA 51
YRL +++TH G S GHY A
Sbjct: 422 YRLVSMVTHLGASQHCGHYTA 442
>AY051896-1|AAK93320.1| 1420|Drosophila melanogaster LD38533p
protein.
Length = 1420
Score = 27.9 bits (59), Expect = 4.1
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 83 DWHCAYLLLYGPKILELPEQDEDEPMVTDITD-DPAGEPPTAL 124
D CA +L+YG +++ LP + ++ ++ D P + PTA+
Sbjct: 148 DSRCAVMLVYGKRLVVLPFRKDNSLDEIELADVKPIKKAPTAM 190
>AF241364-1|AAF98386.1| 507|Drosophila melanogaster cleavage and
polyadenylation specificityfactor protein.
Length = 507
Score = 27.9 bits (59), Expect = 4.1
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 83 DWHCAYLLLYGPKILELPEQDEDEPMVTDITD-DPAGEPPTAL 124
D CA +L+YG +++ LP + ++ ++ D P + PTA+
Sbjct: 148 DSRCAVMLVYGKRLVVLPFRKDNSLDEIELADVKPIKKAPTAM 190
>AE013599-1901|AAF58240.1| 1455|Drosophila melanogaster CG10110-PA,
isoform A protein.
Length = 1455
Score = 27.9 bits (59), Expect = 4.1
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 83 DWHCAYLLLYGPKILELPEQDEDEPMVTDITD-DPAGEPPTAL 124
D CA +L+YG +++ LP + ++ ++ D P + PTA+
Sbjct: 148 DSRCAVMLVYGKRLVVLPFRKDNSLDEIELADVKPIKKAPTAM 190
>AE013599-1900|AAM68553.1| 1420|Drosophila melanogaster CG10110-PB,
isoform B protein.
Length = 1420
Score = 27.9 bits (59), Expect = 4.1
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 83 DWHCAYLLLYGPKILELPEQDEDEPMVTDITD-DPAGEPPTAL 124
D CA +L+YG +++ LP + ++ ++ D P + PTA+
Sbjct: 148 DSRCAVMLVYGKRLVVLPFRKDNSLDEIELADVKPIKKAPTAM 190
>BT010041-1|AAQ22510.1| 852|Drosophila melanogaster LD36231p
protein.
Length = 852
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 30 YYRLQAVLTHRGRSSSSGHYVAWVA-RGAGWLR 61
+Y L A + H G S SGHY + A + W +
Sbjct: 678 HYDLYAGVVHAGYSMDSGHYFTFAADQAKNWYK 710
>AE013599-1490|AAM68683.1| 852|Drosophila melanogaster CG8830-PB,
isoform B protein.
Length = 852
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 30 YYRLQAVLTHRGRSSSSGHYVAWVA-RGAGWLR 61
+Y L A + H G S SGHY + A + W +
Sbjct: 678 HYDLYAGVVHAGYSMDSGHYFTFAADQAKNWYK 710
>AE013599-1489|AAF58508.1| 852|Drosophila melanogaster CG8830-PA,
isoform A protein.
Length = 852
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 30 YYRLQAVLTHRGRSSSSGHYVAWVA-RGAGWLR 61
+Y L A + H G S SGHY + A + W +
Sbjct: 678 HYDLYAGVVHAGYSMDSGHYFTFAADQAKNWYK 710
Database: fruitfly
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 24,830,863
Number of sequences in database: 52,641
Lambda K H
0.317 0.136 0.446
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,285,592
Number of Sequences: 52641
Number of extensions: 281204
Number of successful extensions: 558
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 536
Number of HSP's gapped (non-prelim): 28
length of query: 125
length of database: 24,830,863
effective HSP length: 77
effective length of query: 48
effective length of database: 20,777,506
effective search space: 997320288
effective search space used: 997320288
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)
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