Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002760-TA|BGIBMGA002760-PA|IPR001394|Peptidase C19,
ubiquitin carboxyl-terminal hydrolase 2
(125 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83236-10|CAB05785.1| 489|Caenorhabditis elegans Hypothetical p... 88 2e-18
Z81468-2|CAB03876.1| 489|Caenorhabditis elegans Hypothetical pr... 88 2e-18
U32223-1|AAA74956.1| 489|Caenorhabditis elegans tRNA-guanine tr... 88 2e-18
Z74033-5|CAA98471.2| 822|Caenorhabditis elegans Hypothetical pr... 37 0.005
AB095019-1|BAC22611.1| 822|Caenorhabditis elegans ubiquitin-spe... 37 0.005
AF067616-2|AAC19188.2| 551|Caenorhabditis elegans Deubiquitylat... 34 0.034
AL132902-8|CAC14423.1| 664|Caenorhabditis elegans Hypothetical ... 33 0.045
AF003386-4|AAO38631.1| 452|Caenorhabditis elegans Hypothetical ... 31 0.18
AF003386-3|AAO38630.1| 499|Caenorhabditis elegans Hypothetical ... 31 0.18
U88180-7|AAB42297.2| 789|Caenorhabditis elegans Hypothetical pr... 31 0.24
AC006656-2|AAF39880.1| 326|Caenorhabditis elegans Hypothetical ... 30 0.42
U97012-5|AAK39149.1| 515|Caenorhabditis elegans Hypothetical pr... 30 0.56
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ... 30 0.56
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein. 30 0.56
U00063-8|AAM48535.1| 1031|Caenorhabditis elegans Hypothetical pr... 29 1.3
Z29095-5|CAB54287.1| 398|Caenorhabditis elegans Hypothetical pr... 28 2.3
Z29095-4|CAB54286.1| 410|Caenorhabditis elegans Hypothetical pr... 28 2.3
Z81146-1|CAB03521.2| 341|Caenorhabditis elegans Hypothetical pr... 27 4.0
AL031630-19|CAA20999.1| 123|Caenorhabditis elegans Hypothetical... 27 4.0
Z82267-1|CAB05188.1| 109|Caenorhabditis elegans Hypothetical pr... 27 5.2
Z79601-1|CAB01885.2| 716|Caenorhabditis elegans Hypothetical pr... 27 5.2
Z72512-8|CAH04717.1| 583|Caenorhabditis elegans Hypothetical pr... 27 5.2
Z72512-7|CAA96668.3| 568|Caenorhabditis elegans Hypothetical pr... 27 5.2
Z81479-8|CAB03946.1| 1181|Caenorhabditis elegans Hypothetical pr... 26 6.9
U40059-1|AAA81138.3| 867|Caenorhabditis elegans Hypothetical pr... 26 9.1
L13200-3|AAA28192.1| 304|Caenorhabditis elegans C.elegans chrom... 26 9.1
>Z83236-10|CAB05785.1| 489|Caenorhabditis elegans Hypothetical
protein C13B4.2 protein.
Length = 489
Score = 87.8 bits (208), Expect = 2e-18
Identities = 42/101 (41%), Positives = 58/101 (57%), Gaps = 3/101 (2%)
Query: 22 DVGSNNSGYYRLQAVLTHRGRSSSSGHYVAWV--ARGAGWLRCXXXXXXXXXXXXXLKLS 79
D GSNNSG+Y L+ ++TH+GRSS GHYVAW+ + W LK S
Sbjct: 383 DAGSNNSGFYDLKGIITHKGRSSQDGHYVAWMRSSEDGKWRLFDDEHVTVVDEEAILKTS 442
Query: 80 GGGDWHCAYLLLYGPKILELPEQDEDEPMVTDITDDPAGEP 120
GGGDWH AY+LLY ++++ + P+ T++ D A EP
Sbjct: 443 GGGDWHSAYVLLYEARVIKQFPELPPAPVPTEVAADTA-EP 482
>Z81468-2|CAB03876.1| 489|Caenorhabditis elegans Hypothetical
protein C13B4.2 protein.
Length = 489
Score = 87.8 bits (208), Expect = 2e-18
Identities = 42/101 (41%), Positives = 58/101 (57%), Gaps = 3/101 (2%)
Query: 22 DVGSNNSGYYRLQAVLTHRGRSSSSGHYVAWV--ARGAGWLRCXXXXXXXXXXXXXLKLS 79
D GSNNSG+Y L+ ++TH+GRSS GHYVAW+ + W LK S
Sbjct: 383 DAGSNNSGFYDLKGIITHKGRSSQDGHYVAWMRSSEDGKWRLFDDEHVTVVDEEAILKTS 442
Query: 80 GGGDWHCAYLLLYGPKILELPEQDEDEPMVTDITDDPAGEP 120
GGGDWH AY+LLY ++++ + P+ T++ D A EP
Sbjct: 443 GGGDWHSAYVLLYEARVIKQFPELPPAPVPTEVAADTA-EP 482
>U32223-1|AAA74956.1| 489|Caenorhabditis elegans tRNA-guanine
transglycosylase protein.
Length = 489
Score = 87.8 bits (208), Expect = 2e-18
Identities = 42/101 (41%), Positives = 58/101 (57%), Gaps = 3/101 (2%)
Query: 22 DVGSNNSGYYRLQAVLTHRGRSSSSGHYVAWV--ARGAGWLRCXXXXXXXXXXXXXLKLS 79
D GSNNSG+Y L+ ++TH+GRSS GHYVAW+ + W LK S
Sbjct: 383 DAGSNNSGFYDLKGIMTHKGRSSQDGHYVAWMRSSEDGKWRLFDDEHVTVVDEEAILKTS 442
Query: 80 GGGDWHCAYLLLYGPKILELPEQDEDEPMVTDITDDPAGEP 120
GGGDWH AY+LLY ++++ + P+ T++ D A EP
Sbjct: 443 GGGDWHSAYVLLYEARVIKQFPELPPAPVPTEVAADTA-EP 482
>Z74033-5|CAA98471.2| 822|Caenorhabditis elegans Hypothetical
protein F38B7.5 protein.
Length = 822
Score = 36.7 bits (81), Expect = 0.005
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 29 GYYRLQAVLTHRGRSSSSGHYVAW---VARGAGWLRC 62
G Y L AV+ H G S + GHYVA+ + + + WLRC
Sbjct: 757 GTYSLVAVVCHLGDSPNKGHYVAYTKELYKNSSWLRC 793
>AB095019-1|BAC22611.1| 822|Caenorhabditis elegans
ubiquitin-specific protease protein.
Length = 822
Score = 36.7 bits (81), Expect = 0.005
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 29 GYYRLQAVLTHRGRSSSSGHYVAW---VARGAGWLRC 62
G Y L AV+ H G S + GHYVA+ + + + WLRC
Sbjct: 757 GTYSLVAVVCHLGDSPNKGHYVAYTKELYKNSSWLRC 793
>AF067616-2|AAC19188.2| 551|Caenorhabditis elegans Deubiquitylating
with usp/ubp andotu domains protein 2 protein.
Length = 551
Score = 33.9 bits (74), Expect = 0.034
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 31 YRLQAVLTHRGRSSSSGHYVAWVARGA---GWLRC 62
Y L +V+ H G S + GH+VA+ + GWLRC
Sbjct: 488 YTLVSVVCHLGSSPNKGHHVAYTKKSLDNDGWLRC 522
>AL132902-8|CAC14423.1| 664|Caenorhabditis elegans Hypothetical
protein Y71A12B.9 protein.
Length = 664
Score = 33.5 bits (73), Expect = 0.045
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 31 YRLQAVLTHRGRSSSSGHYVAWVARGAGWLR 61
Y LQ+++ H G SGHY+A+ R W +
Sbjct: 602 YSLQSIIVHIGYGCGSGHYIAFGKRNGRWFQ 632
>AF003386-4|AAO38631.1| 452|Caenorhabditis elegans Hypothetical
protein F59E12.6b protein.
Length = 452
Score = 31.5 bits (68), Expect = 0.18
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 25 SNNSGYYRLQAVLTHRGRSSSSGHYVAWV 53
+N+S YY+L ++ H G S+ GH+ ++V
Sbjct: 273 ANSSCYYKLTGLIVHVGSSAKEGHFYSFV 301
>AF003386-3|AAO38630.1| 499|Caenorhabditis elegans Hypothetical
protein F59E12.6a protein.
Length = 499
Score = 31.5 bits (68), Expect = 0.18
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 25 SNNSGYYRLQAVLTHRGRSSSSGHYVAWV 53
+N+S YY+L ++ H G S+ GH+ ++V
Sbjct: 320 ANSSCYYKLTGLIVHVGSSAKEGHFYSFV 348
>U88180-7|AAB42297.2| 789|Caenorhabditis elegans Hypothetical
protein T27A3.2 protein.
Length = 789
Score = 31.1 bits (67), Expect = 0.24
Identities = 16/59 (27%), Positives = 25/59 (42%)
Query: 2 ACVMGSKDPATPAEGRCVCADVGSNNSGYYRLQAVLTHRGRSSSSGHYVAWVARGAGWL 60
A V S D P+ + Y+L +++H G SGHYVA + + W+
Sbjct: 704 AAVGLSSDAPEPSVTESATQKTFKDGGEKYKLIGMISHMGSRPDSGHYVAHMLKEGKWV 762
>AC006656-2|AAF39880.1| 326|Caenorhabditis elegans Hypothetical
protein H12I13.2 protein.
Length = 326
Score = 30.3 bits (65), Expect = 0.42
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 16 GRCVCADVGSNNSGYYRLQAVLTHRGRSSSSGHY 49
G V + Y++L +V+ HRG + SGH+
Sbjct: 280 GNLVTESSATKEKCYFKLTSVMVHRGECAQSGHF 313
>U97012-5|AAK39149.1| 515|Caenorhabditis elegans Hypothetical
protein C04E6.5 protein.
Length = 515
Score = 29.9 bits (64), Expect = 0.56
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 31 YRLQAVLTHRGRSSSSGHYVAWVARGA--GWLRC 62
Y L A + H G + ++GHY+A+ WL C
Sbjct: 453 YSLVAAICHLGETPTNGHYIAYTREDTENSWLYC 486
>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
protein.
Length = 1829
Score = 29.9 bits (64), Expect = 0.56
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 82 GDWHCAYLLLYGPKIL-ELPEQDEDE 106
GDW CA+ + +GP+++ E P + DE
Sbjct: 293 GDWSCAHCIEHGPEVVKEEPAKQNDE 318
>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
Length = 1829
Score = 29.9 bits (64), Expect = 0.56
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 82 GDWHCAYLLLYGPKIL-ELPEQDEDE 106
GDW CA+ + +GP+++ E P + DE
Sbjct: 293 GDWSCAHCIEHGPEVVKEEPAKQNDE 318
>U00063-8|AAM48535.1| 1031|Caenorhabditis elegans Hypothetical
protein F56C9.10b protein.
Length = 1031
Score = 28.7 bits (61), Expect = 1.3
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 94 PKILELPEQDEDE-PMVTDITDDPAGEPPTALA 125
P + + PE+DED P+V T P PP+ A
Sbjct: 101 PNVKDSPEEDEDAVPVVNRTTTSPPTSPPSQTA 133
>Z29095-5|CAB54287.1| 398|Caenorhabditis elegans Hypothetical
protein R10E11.3b protein.
Length = 398
Score = 27.9 bits (59), Expect = 2.3
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 31 YRLQAVLTHRGRSSSSGHYVAWVARGAGWL 60
Y L A + H G + + GHY+ V + WL
Sbjct: 313 YDLVATVVHCGATPNRGHYITLVKSNSFWL 342
>Z29095-4|CAB54286.1| 410|Caenorhabditis elegans Hypothetical
protein R10E11.3a protein.
Length = 410
Score = 27.9 bits (59), Expect = 2.3
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 31 YRLQAVLTHRGRSSSSGHYVAWVARGAGWL 60
Y L A + H G + + GHY+ V + WL
Sbjct: 325 YDLVATVVHCGATPNRGHYITLVKSNSFWL 354
>Z81146-1|CAB03521.2| 341|Caenorhabditis elegans Hypothetical
protein K10D11.1 protein.
Length = 341
Score = 27.1 bits (57), Expect = 4.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 26 NNSGYYRLQAVLTHRGRSSSSGHYVA 51
N + Y L++ L + GRS SS +YV+
Sbjct: 175 NETSYSSLRSALVYEGRSLSSANYVS 200
>AL031630-19|CAA20999.1| 123|Caenorhabditis elegans Hypothetical
protein Y38H6C.22 protein.
Length = 123
Score = 27.1 bits (57), Expect = 4.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 8 KDPATPAEGRCVCADVGSNNSG 29
+DP T A RCVC +NSG
Sbjct: 56 EDPMTTAPARCVCEKCYRDNSG 77
>Z82267-1|CAB05188.1| 109|Caenorhabditis elegans Hypothetical
protein F38C2.1 protein.
Length = 109
Score = 26.6 bits (56), Expect = 5.2
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 22 DVGSNNSGYYRLQAVLTHRGRSSSSGH-----YVAWVARGAG 58
+V + GYY VL H+G+ + G+ Y+A A G G
Sbjct: 27 EVWAEVEGYYHPSGVLVHKGKEAVYGNKDKSTYIAKFAEGTG 68
>Z79601-1|CAB01885.2| 716|Caenorhabditis elegans Hypothetical
protein K09A9.4 protein.
Length = 716
Score = 26.6 bits (56), Expect = 5.2
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 25 SNNSGYYRLQAVLTHRGRSSSSGHYVAW 52
S Y L + H GRS GHYV++
Sbjct: 483 SGEPALYDLVGFVVHEGRSLEFGHYVSY 510
>Z72512-8|CAH04717.1| 583|Caenorhabditis elegans Hypothetical
protein R07B5.8b protein.
Length = 583
Score = 26.6 bits (56), Expect = 5.2
Identities = 11/20 (55%), Positives = 11/20 (55%)
Query: 100 PEQDEDEPMVTDITDDPAGE 119
P EDEPM D DDP E
Sbjct: 93 PLSQEDEPMELDSDDDPVNE 112
>Z72512-7|CAA96668.3| 568|Caenorhabditis elegans Hypothetical
protein R07B5.8a protein.
Length = 568
Score = 26.6 bits (56), Expect = 5.2
Identities = 11/20 (55%), Positives = 11/20 (55%)
Query: 100 PEQDEDEPMVTDITDDPAGE 119
P EDEPM D DDP E
Sbjct: 138 PLSQEDEPMELDSDDDPVNE 157
>Z81479-8|CAB03946.1| 1181|Caenorhabditis elegans Hypothetical protein
C34F6.9 protein.
Length = 1181
Score = 26.2 bits (55), Expect = 6.9
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 26 NNSGYYRLQAVLTHRGRSSSSGHY 49
NN+ Y L + + H G++ +GHY
Sbjct: 1086 NNAHNYELCSFIAHCGKNGDNGHY 1109
>U40059-1|AAA81138.3| 867|Caenorhabditis elegans Hypothetical
protein K03C7.1 protein.
Length = 867
Score = 25.8 bits (54), Expect = 9.1
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 100 PEQDEDEPMVTDITDDPAGEP 120
P +DEDEP D ++P EP
Sbjct: 528 PGEDEDEPEDADDEEEPEDEP 548
>L13200-3|AAA28192.1| 304|Caenorhabditis elegans C.elegans
chromodomain proteinprotein 1 protein.
Length = 304
Score = 25.8 bits (54), Expect = 9.1
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 25 SNNSGYYRLQAVLTHRGRSSSSGHYVAWV 53
++ S Y ++++L HR + S Y+ W+
Sbjct: 2 ADGSELYTVESILEHRKKKGKSEFYIKWL 30
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.317 0.136 0.446
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,382,006
Number of Sequences: 27539
Number of extensions: 119641
Number of successful extensions: 295
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 268
Number of HSP's gapped (non-prelim): 26
length of query: 125
length of database: 12,573,161
effective HSP length: 73
effective length of query: 52
effective length of database: 10,562,814
effective search space: 549266328
effective search space used: 549266328
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 54 (25.8 bits)
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