GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002760-TA|BGIBMGA002760-PA|IPR001394|Peptidase C19,
ubiquitin carboxyl-terminal hydrolase 2
         (125 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   5.5  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    20   9.6  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              20   9.6  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 11/29 (37%), Positives = 14/29 (48%)

Query: 16  GRCVCADVGSNNSGYYRLQAVLTHRGRSS 44
           G  V +D G NNS  +  Q+   H G  S
Sbjct: 382 GSSVHSDSGENNSRGHSGQSSSHHHGSKS 410


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 9/29 (31%), Positives = 12/29 (41%)

Query: 3   CVMGSKDPATPAEGRCVCADVGSNNSGYY 31
           C    K   TP +   +C   G   SGY+
Sbjct: 170 CDARKKKGPTPRQQEELCLVCGDRASGYH 198


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 10/31 (32%), Positives = 12/31 (38%)

Query: 13  PAEGRCVCADVGSNNSGYYRLQAVLTHRGRS 43
           P   R VCA  G   + +  L     H G S
Sbjct: 111 PRRHRPVCASNGKIYANHCELHRAACHSGSS 141


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.136    0.446 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,705
Number of Sequences: 429
Number of extensions: 1134
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 125
length of database: 140,377
effective HSP length: 51
effective length of query: 74
effective length of database: 118,498
effective search space:  8768852
effective search space used:  8768852
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.7 bits)
S2: 39 (19.8 bits)