GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002759-TA|BGIBMGA002759-PA|IPR001394|Peptidase C19,
ubiquitin carboxyl-terminal hydrolase 2, IPR000626|Ubiquitin
         (408 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    24   1.7  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    24   1.7  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    22   6.9  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    22   6.9  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   9.1  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   9.1  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   9.1  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   9.1  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   9.1  

>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 47  VCKGVTLRDDTWGNFKLTNNALVLVMG 73
           VC  + L  + W  F + NN L +V+G
Sbjct: 169 VCFMMLLMLEIWRRFTILNNYLTIVLG 195


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 47  VCKGVTLRDDTWGNFKLTNNALVLVMG 73
           VC  + L  + W  F + NN L +V+G
Sbjct: 165 VCFMMLLMLEIWRRFTILNNYLTIVLG 191


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 8/23 (34%), Positives = 12/23 (52%)

Query: 193 DASECWTEIVRALQQRLPAAPMP 215
           D S CW+E + +    L   P+P
Sbjct: 36  DLSSCWSEDMGSFSLPLDLEPLP 58


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 13/28 (46%), Positives = 15/28 (53%)

Query: 344 LQERLTPMRNKFKELEDAKVQSSLSSGN 371
           +Q RLT MRN       A    S+SSGN
Sbjct: 406 MQFRLTLMRNAQLAARRAIANVSVSSGN 433


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 262  QDVKYLQSGLRSKMAEHITKMSQTLGRDAVYTKTSKISR 300
            + +K L+  + S MAE      QTLG    Y   + ++R
Sbjct: 1466 ETMKALEVRVNSVMAERRKSHMQTLGAKNEYGNNNVVAR 1504


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 262  QDVKYLQSGLRSKMAEHITKMSQTLGRDAVYTKTSKISR 300
            + +K L+  + S MAE      QTLG    Y   + ++R
Sbjct: 1466 ETMKALEVRVNSVMAERRKSHMQTLGAKNEYGNNNVVAR 1504


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 262  QDVKYLQSGLRSKMAEHITKMSQTLGRDAVYTKTSKISR 300
            + +K L+  + S MAE      QTLG    Y   + ++R
Sbjct: 1466 ETMKALEVRVNSVMAERRKSHMQTLGAKNEYGNNNVVAR 1504


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 262  QDVKYLQSGLRSKMAEHITKMSQTLGRDAVYTKTSKISR 300
            + +K L+  + S MAE      QTLG    Y   + ++R
Sbjct: 1466 ETMKALEVRVNSVMAERRKSHMQTLGAKNEYGNNNVVAR 1504


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 8/17 (47%), Positives = 13/17 (76%)

Query: 363 VQSSLSSGNKSHGDSSK 379
           V+S ++SG KS GD ++
Sbjct: 9   VESEITSGGKSKGDPTE 25


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.130    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,449
Number of Sequences: 317
Number of extensions: 3102
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 9
length of query: 408
length of database: 114,650
effective HSP length: 58
effective length of query: 350
effective length of database: 96,264
effective search space: 33692400
effective search space used: 33692400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 44 (21.8 bits)