GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002759-TA|BGIBMGA002759-PA|IPR001394|Peptidase C19,
ubiquitin carboxyl-terminal hydrolase 2, IPR000626|Ubiquitin
         (408 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090817-1|BAC57909.1|  344|Anopheles gambiae gag-like protein p...    25   4.9  
CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    24   8.6  

>AB090817-1|BAC57909.1|  344|Anopheles gambiae gag-like protein
           protein.
          Length = 344

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 11/41 (26%), Positives = 22/41 (53%)

Query: 347 RLTPMRNKFKELEDAKVQSSLSSGNKSHGDSSKAKKKRVLP 387
           RLTP+R   + +   +   +++ G+ +     K+KKK+  P
Sbjct: 73  RLTPVREAVENIPSPRNGPNINEGSINKRKKKKSKKKQNKP 113


>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskeletal
            structural protein protein.
          Length = 1645

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 9/27 (33%), Positives = 17/27 (62%)

Query: 21   NTDDEPVLFKAQIFALTGVQPERQKVV 47
            + D   V   +  +++TGV+PE++ VV
Sbjct: 1270 SADSNSVATHSSYYSVTGVEPEKEFVV 1296


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.315    0.130    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 362,066
Number of Sequences: 2123
Number of extensions: 13286
Number of successful extensions: 16
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 2
length of query: 408
length of database: 516,269
effective HSP length: 66
effective length of query: 342
effective length of database: 376,151
effective search space: 128643642
effective search space used: 128643642
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 49 (23.8 bits)