GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002759-TA|BGIBMGA002759-PA|IPR001394|Peptidase C19,
ubiquitin carboxyl-terminal hydrolase 2, IPR000626|Ubiquitin
         (408 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   2.0  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    23   6.2  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   8.2  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   8.2  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   8.2  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.2 bits (50), Expect = 2.0
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 352 RNKFKELEDAKVQSSLSSGNKSHGDSSKAKKKRVLPYWFENGML 395
           R  FK L D+K  S L   +K+  D +     R L Y+++ G+L
Sbjct: 485 RGVFK-LVDSKAVSRLWGLHKNKPDMNYETMGRALRYYYQRGIL 527



 Score = 22.6 bits (46), Expect = 6.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 269 SGLRSKMAEHITKMSQTLGRDAVYT 293
           S L+  +A H + +S  LGR A ++
Sbjct: 277 SSLQPSLASHHSHLSSALGRSACHS 301


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 22.6 bits (46), Expect = 6.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 356 KELEDAKVQSSLSSGNKSHGDSSKAKKKRV 385
           KELE   +Q+       +HG SSK +K  V
Sbjct: 82  KELEVLMMQNRKFCAEIAHGGSSKKRKSIV 111


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.2 bits (45), Expect = 8.2
 Identities = 9/36 (25%), Positives = 19/36 (52%)

Query: 89  FVEDMNEAELATAMDMPEGLINLGNTCYMNATVQCL 124
           F  D+N ++L   +++P  +   G    ++ TVQ +
Sbjct: 160 FAFDLNTSQLLKQVEIPHDVATTGKGELVSLTVQAM 195


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.2 bits (45), Expect = 8.2
 Identities = 8/16 (50%), Positives = 12/16 (75%)

Query: 321 NAKILKDVKFPLDLDV 336
           N+K+LK VK P D+ +
Sbjct: 161 NSKLLKQVKIPHDIAI 176


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 8.2
 Identities = 14/44 (31%), Positives = 21/44 (47%)

Query: 101 AMDMPEGLINLGNTCYMNATVQCLKTVPELRNALLNYDKSGELT 144
           A + PEGL+ L      N T     ++  L +AL   +KS  +T
Sbjct: 269 ASNAPEGLLGLKLINAENETAHIKDSLIVLTSALQEMNKSKSIT 312


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.130    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,352
Number of Sequences: 429
Number of extensions: 3808
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 6
length of query: 408
length of database: 140,377
effective HSP length: 59
effective length of query: 349
effective length of database: 115,066
effective search space: 40158034
effective search space used: 40158034
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)