GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002758-TA|BGIBMGA002758-PA|IPR002048|Calcium-binding
EF-hand
         (146 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    26   0.18 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   2.3  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              21   4.0  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   5.2  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 25.8 bits (54), Expect = 0.18
 Identities = 12/47 (25%), Positives = 25/47 (53%)

Query: 46  EQKAPLTDYDKLVDMFYKSSAVLESLGDESTTEVRKEKFHAADTDMD 92
           ++ +PL D  +L ++  + +A++E  GD  T       F+A+   +D
Sbjct: 228 QENSPLLDLRQLQELHLQRNAIVEIAGDALTGLTVLRTFNASYNSLD 274



 Score = 20.6 bits (41), Expect = 6.9
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query: 101 LSLVYNFDPKRDEQLSGLALLCNEV 125
           +S  YN   +  +QL+GL L+ N++
Sbjct: 466 ISNFYNGSFRNLDQLTGLRLIGNDI 490


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 29  RQEDFTATGEPIKKVAEEQKAPLTDYDKLVDMFYKSSAVLESLGDESTTE 78
           R ED      P+ K    Q  PL D + L+D  YK      +L  + + E
Sbjct: 609 RSEDKEVEDMPVLKRVL-QAPPLYDTNSLMDEAYKPHKKFRALRQKDSAE 657


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 9/33 (27%), Positives = 16/33 (48%)

Query: 56 KLVDMFYKSSAVLESLGDESTTEVRKEKFHAAD 88
          K++D  Y  +  +E    +S  E   +KF+  D
Sbjct: 42 KIIDEVYNGNVNVEDENVQSYVECMMKKFNVVD 74


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)

Query: 13  GRFFEYPVKRKP 24
           GR FE+P+K  P
Sbjct: 307 GRLFEFPIKFVP 318



 Score = 20.6 bits (41), Expect = 6.9
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 6/28 (21%)

Query: 98  DEFLSLVYNFDPKRDEQLSGLALLCNEV 125
           +EFLS +   DPK       +AL C EV
Sbjct: 31  EEFLSTILRLDPK------FIALHCQEV 52


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.137    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,189
Number of Sequences: 429
Number of extensions: 1599
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 146
length of database: 140,377
effective HSP length: 52
effective length of query: 94
effective length of database: 118,069
effective search space: 11098486
effective search space used: 11098486
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
S2: 40 (20.2 bits)