GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002757-TA|BGIBMGA002757-PA|IPR013017|NHL, IPR000315|Zinc
finger, B-box, IPR007087|Zinc finger, C2H2-type, IPR001258|NHL repeat,
IPR011041|Soluble quinoprotein glucose dehydrogenase
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    29   3.0  
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...    27   6.9  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    27   6.9  
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces...    27   6.9  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    27   6.9  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    27   9.1  
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc...    27   9.1  

>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/46 (26%), Positives = 27/46 (58%)

Query: 255 AMSKAYEKETAEANMKIRKAMRCYAQAIEDREKYLLDKVEKMRQAK 300
           +M+KA+E+ + + N ++R  +R Y    E ++    + +E++ Q K
Sbjct: 98  SMAKAHEEVSQQINTELRNKIREYIDQTEQQKVVAANAIEELYQKK 143


>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 8/36 (22%)

Query: 123 CFRCEERTPTT------RCLECNDLFCHECCHKVTS 152
           C RC  RTP T       C  C  +FC++C  K  S
Sbjct: 176 CLRC--RTPFTFTNRKHHCRNCGGVFCNQCSSKTLS 209


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 260  YEKETAEANMKIRKAMRCYAQAIEDREKYLLDKVEKMRQAKMNELSDHMNTLRGI 314
            YE E + A  +IR+     A     R ++   K+ ++  +  NEL +H+N+L  +
Sbjct: 995  YEFERSRAFDQIRQTDA--ANTFYSRHRHDRQKIMQLSNSLQNELKEHINSLESV 1047


>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1009

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 2/66 (3%)

Query: 282 IEDREKYLLDKVEKMRQAKMNELSDHMNTLRGILAGLAHTNETLVRCMDS--DGIELFMA 339
           ++ +EK + D +E   ++  N  SDH   L     G A   + + + + S   G+ +   
Sbjct: 548 VDAQEKRVWDILESSFESSKNYKSDHREWLSNPWVGFASPKDLMTKILPSYPTGVNIDTL 607

Query: 340 KEKGRA 345
           K+ G+A
Sbjct: 608 KQIGKA 613


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query: 123 CFRCEERTPTTRCLECNDLFCHECCHKVTSDCQLREHT 160
           CF C E    +  L CN   CH C  ++ +  + +E T
Sbjct: 81  CFICAEGITYSCVLPCNHRMCHVCALRLRALYKTKECT 118


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/49 (26%), Positives = 26/49 (53%)

Query: 261 EKETAEANMKIRKAMRCYAQAIEDREKYLLDKVEKMRQAKMNELSDHMN 309
           EK+  E  M+ ++ +  + ++I    K ++ KV+K  +AK     D +N
Sbjct: 702 EKQKTEHAMRQKEKLLTHLRSIMLHRKSIVTKVDKQNKAKTQRCKDIIN 750


>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1106

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 169 PIGARPNSVNNEKEVIYCELHGDPV-RFYCEACIIFICQE 207
           P G RPN++N        + HG P  ++  E   +FI Q+
Sbjct: 878 PCGGRPNAININNVEQLIDDHGRPAFKYLVEGANLFITQD 917


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.136    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,890,271
Number of Sequences: 5004
Number of extensions: 115201
Number of successful extensions: 248
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 244
Number of HSP's gapped (non-prelim): 8
length of query: 721
length of database: 2,362,478
effective HSP length: 78
effective length of query: 643
effective length of database: 1,972,166
effective search space: 1268102738
effective search space used: 1268102738
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)