GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002757-TA|BGIBMGA002757-PA|IPR013017|NHL, IPR000315|Zinc
finger, B-box, IPR007087|Zinc finger, C2H2-type, IPR001258|NHL repeat,
IPR011041|Soluble quinoprotein glucose dehydrogenase
         (721 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          23   6.6  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   8.7  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              23   8.7  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    23   8.7  

>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 23.4 bits (48), Expect = 6.6
 Identities = 11/38 (28%), Positives = 16/38 (42%)

Query: 193 VRFYCEACIIFICQECTLWVHKDHCFTPMKGALDMCRV 230
           V  + + CI+   +    W+H D  F P K     C V
Sbjct: 50  VNKWSKVCIVVRRKLEENWIHVDISFLPEKSTSSRCAV 87


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.0 bits (47), Expect = 8.7
 Identities = 13/35 (37%), Positives = 15/35 (42%)

Query: 543 GEFDLPAGITTDTYGRIIVIDKDNHRVQIFTSSGN 577
           G F LP  +    YGRI  +    HR    T S N
Sbjct: 205 GSFFLPMLVMLYVYGRISCVIASRHRNLEATESEN 239


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 23.0 bits (47), Expect = 8.7
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)

Query: 324 TLVRCMDSDGIELFMAKEKGRAQV 347
           TL  C D+DGI+L M +E G  ++
Sbjct: 105 TLHHCYDADGIKL-MNEENGVMEI 127


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 23.0 bits (47), Expect = 8.7
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)

Query: 324 TLVRCMDSDGIELFMAKEKGRAQV 347
           TL  C D+DGI+L M +E G  ++
Sbjct: 105 TLHHCYDADGIKL-MNEENGVMEI 127


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.136    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,108
Number of Sequences: 429
Number of extensions: 7806
Number of successful extensions: 17
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 4
length of query: 721
length of database: 140,377
effective HSP length: 63
effective length of query: 658
effective length of database: 113,350
effective search space: 74584300
effective search space used: 74584300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 47 (23.0 bits)