GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002756-TA|BGIBMGA002756-PA|IPR000073|Alpha/beta
hydrolase fold-1, IPR003089|Alpha/beta hydrolase
         (333 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    25   0.59 
AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory recept...    23   4.1  
AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory recept...    23   4.1  
AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory recept...    23   4.1  
DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory pro...    22   5.5  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   9.5  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 25.4 bits (53), Expect = 0.59
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 216 YGSRSWVDNSTGHVLSEHRPHSRTYVQVH 244
           Y S +W  N  GH  S H  +++ Y   +
Sbjct: 281 YNSFNWTANGHGHNTSSHNYYAQNYAPTY 309


>AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory receptor
           candidate 47 protein.
          Length = 387

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)

Query: 219 RSWVDNSTGHVLSEH 233
           RS +D+  GHV+ EH
Sbjct: 35  RSELDSKDGHVIDEH 49


>AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory receptor
           candidate 26 protein.
          Length = 387

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)

Query: 219 RSWVDNSTGHVLSEH 233
           RS +D+  GHV+ EH
Sbjct: 35  RSELDSKDGHVIDEH 49


>AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory receptor
           candidate 6 protein.
          Length = 387

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)

Query: 219 RSWVDNSTGHVLSEH 233
           RS +D+  GHV+ EH
Sbjct: 35  RSELDSKDGHVIDEH 49


>DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory
           protein 5 protein.
          Length = 144

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 257 VVYRDRVIRNTVHRVVLSNVYTVLYRN 283
           +++ D V   T+HR    + YT  Y N
Sbjct: 14  IIFSDFVNGKTLHRSTRDDKYTTRYDN 40


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 263 VIRNTVHRVVLSNVYTVLYRNHVLGCHHVYLDKPEL 298
           V ++T H V + N+Y  +    V     + +DK EL
Sbjct: 278 VNKSTAHAVGVGNIYDRVLSELVNKMKEMKMDKTEL 313


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.135    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,568
Number of Sequences: 317
Number of extensions: 3560
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 6
length of query: 333
length of database: 114,650
effective HSP length: 57
effective length of query: 276
effective length of database: 96,581
effective search space: 26656356
effective search space used: 26656356
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)