GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002756-TA|BGIBMGA002756-PA|IPR000073|Alpha/beta
hydrolase fold-1, IPR003089|Alpha/beta hydrolase
         (333 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.03c |||abhydrolase family protein, unknown biological r...    77   5e-15
SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb...    33   0.057
SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr ...    33   0.075
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3...    33   0.075
SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|c...    31   0.23 
SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family ...    30   0.40 
SPAC3A12.08 |||conserved fungal protein|Schizosaccharomyces pomb...    28   1.6  
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom...    27   2.8  
SPAC13G7.07 |arb2||argonaute binding protein 2|Schizosaccharomyc...    27   4.9  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    26   6.5  
SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyc...    26   8.6  

>SPAC6G10.03c |||abhydrolase family protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 428

 Score = 76.6 bits (180), Expect = 5e-15
 Identities = 45/116 (38%), Positives = 61/116 (52%), Gaps = 11/116 (9%)

Query: 2   LHGMGAGLALWCPNFDALAE--TRPV--YAIDLLGFGRSSRPKF------ATEALK-AEA 50
           +HG GAGL  +  N D L +  T+    Y +D LG G SSRP F      A+E ++  E 
Sbjct: 97  MHGYGAGLGFYFRNMDGLTKGVTKDFNSYFVDWLGMGNSSRPPFDIKGQTASEKVEETER 156

Query: 51  QXXXXXXXXXXXXNLPQFILLGHSLGGYIATSYAMKYPERVRHLILADPWGFPERP 106
                         + + IL+GHS+GGY++  YAM+YPERV  L+L  P   PE P
Sbjct: 157 FFTESLETWRIGHGIEKMILVGHSMGGYLSAVYAMQYPERVEKLLLVSPVAIPENP 212



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/17 (64%), Positives = 13/17 (76%)

Query: 289 HHVYLDKPELFNKYVLE 305
           HH YLD PE FN+ VL+
Sbjct: 398 HHCYLDNPEDFNEIVLK 414


>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 33.1 bits (72), Expect = 0.057
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 2/33 (6%)

Query: 70  LLGHSLGGYIATSYAMKYPERVRHLILAD--PW 100
           ++GHS+G   A   A+K+P++V  L++ D  PW
Sbjct: 91  IIGHSMGAKTAMVTALKWPDKVEKLVVVDNSPW 123


>SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 364

 Score = 32.7 bits (71), Expect = 0.075
 Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 8/105 (7%)

Query: 2   LHGMGAGLALWCPNFDALAETRPVYAIDLLGFGRSSRPKFATEALKAEAQXXXXXXXXXX 61
           LHG+G  ++ +         T  +++ D  G G S R  F  + + +  Q          
Sbjct: 105 LHGLGGQMSQFQKVMSYFPPTACLFSFDYWGCGLS-RQAFPNQRIGSVDQLTTKGLSKLT 163

Query: 62  XXNLP-------QFILLGHSLGGYIATSYAMKYPERVRHLILADP 99
              L        QFIL+GHS+G  IA+  +     R   L+L +P
Sbjct: 164 YKVLEKLFPENTQFILIGHSMGATIASRVSKMLQTRCTALLLLNP 208


>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 378

 Score = 32.7 bits (71), Expect = 0.075
 Identities = 29/94 (30%), Positives = 37/94 (39%), Gaps = 6/94 (6%)

Query: 2   LHGMGAGLALWCPNFDALAETR-PVYAIDLLGFGRSSR--PKF--ATEALKAEAQXXXXX 56
           +HG G  +  +   F+AL E    VY  D  GFG S +  PK    T             
Sbjct: 23  IHGFGEHVNAYPEFFEALNERNIEVYTFDQRGFGHSRKGGPKKQGCTGGWSLVFPDLDYQ 82

Query: 57  XXXXXXXNLPQFILLGHSLGGYIATSYAMKYPER 90
                   LP F L GHS+GG +A  Y +    R
Sbjct: 83  ILRASDTELPLF-LWGHSMGGGLALRYGISGTHR 115


>SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 25  VYAIDLLGFGRSSRPKFATEALKAEAQXXXXXXXXXXXXNLPQFILLGHSLGGYIATSYA 84
           V+ I   G+G+S+    +   LK ++Q            +  + ++ G S+GG +A +  
Sbjct: 120 VFIISYRGYGKSTGSP-SEAGLKIDSQTALEYLMEHPICSKTKIVVYGQSIGGAVAIALT 178

Query: 85  MKYPERVRHLIL 96
            K  +R+  LIL
Sbjct: 179 AKNQDRISALIL 190


>SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 7/61 (11%)

Query: 197 NPMVKRIDKLSPALPITVLYGSRSWVDNSTGHVLSEHRPHSRTYVQVHASIPYNAIIFAS 256
           N   K+ DKL+P       Y   SWVD+ T   L+ H       ++ +A +P   ++ A 
Sbjct: 212 NCFQKQGDKLTP-------YDFNSWVDSQTAQELASHMDRDEILLEGYAELPTYRMLMAK 264

Query: 257 V 257
           +
Sbjct: 265 I 265


>SPAC3A12.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 214

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 9/19 (47%), Positives = 14/19 (73%)

Query: 139 PAGRWLVSRTRPDISRKYN 157
           PAG W++ R + D++R YN
Sbjct: 182 PAGDWVIVRVKDDVARLYN 200


>SPAC23H3.05c |swd1||COMPASS complex subunit
           Swd1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 6/51 (11%)

Query: 218 SRSW---VDNSTGHVLSEHRPHSRTYVQVHASIPYNAIIFASVVYRDRVIR 265
           S+ W   +D ST  + S HR  S++  Q+  S     +IF S    DRVIR
Sbjct: 185 SKGWFHVIDASTTKIRSSHRITSQSIKQIRLSFCKRFLIFNST---DRVIR 232


>SPAC13G7.07 |arb2||argonaute binding protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 266

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 5/66 (7%)

Query: 170 YIYQCNSQTPSGESAFHSLMTG-FGWA-KNPMVKRID---KLSPALPITVLYGSRSWVDN 224
           Y +Q        E  + +++   + W  +N ++ RI    + SP+ P + +Y +R+W  N
Sbjct: 43  YEFQVTKDKEYNEKFYFAVLDHVYSWTLQNSLLTRISIPLESSPSEPHSWIYATRNWQTN 102

Query: 225 STGHVL 230
             G V+
Sbjct: 103 ENGIVI 108


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 210 LPITVLYGSRSWVDNSTGHVLSEHRPHSRTYVQVHASIPYNAIIFASVVYRDRVIRNTVH 269
           +P  VL   R   +N   H+ S +  HS   +QV +     A IF++++ R   + +T H
Sbjct: 467 VPPPVLVLLRHLAENLVNHISSIYASHSSCLLQVKSE---TAAIFSNLLSRLLRVNDTAH 523


>SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 274 SNVYTVLYRNHVLGCHHVYLDKPELFNKYVLEACSRADE-YDPRTSTVAEGDTNKTEEH 331
           ++ Y V + +H      + + K  ++ +Y  +  S+A+E + P T+ + +G T K  EH
Sbjct: 23  TSAYAVRFAHHTSNNDDLEVKKNTVYERYERKLKSKAEELHMPVTNLLKKGQT-KEREH 80


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.135    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,560,709
Number of Sequences: 5004
Number of extensions: 64606
Number of successful extensions: 131
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 122
Number of HSP's gapped (non-prelim): 12
length of query: 333
length of database: 2,362,478
effective HSP length: 73
effective length of query: 260
effective length of database: 1,997,186
effective search space: 519268360
effective search space used: 519268360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)