Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002754-TA|BGIBMGA002754-PA|IPR001998|Xylose isomerase,
IPR003959|AAA ATPase, central region, IPR003593|AAA ATPase
(500 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni... 233 4e-62
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 107 3e-24
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 34 0.040
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ... 33 0.092
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 31 0.37
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 31 0.49
SPAC23D3.02 |rfc2||DNA replication factor C complex subunit Rfc2... 31 0.49
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 31 0.49
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 30 0.86
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S... 29 1.1
SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom... 29 1.1
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 29 1.5
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 29 1.5
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 29 2.0
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo... 28 2.6
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 28 2.6
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 27 4.6
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 27 4.6
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S... 27 4.6
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 27 6.0
>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
Orc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 707
Score = 233 bits (570), Expect = 4e-62
Identities = 125/284 (44%), Positives = 178/284 (62%), Gaps = 9/284 (3%)
Query: 150 RESQMDEILSFVRSKLLDGTSGCIYISGVPGTGKTATVSSA---LQILKKEANLPEFQLV 206
R+++ I S + S + + T C+YISG PGTGKTATV LQ L +E LPEF
Sbjct: 341 RDNEFSTIFSNLESAIEEETGACLYISGTPGTGKTATVHEVIWNLQELSREGQLPEFSFC 400
Query: 207 EVNGMRLAEPRQAFVQIYKQLTGKSVVWEQACSLLEKRFTNMGPRRTPTVLLVDELDALC 266
E+NGMR+ QA+ +++ LTG+ V A LL+ RFT+ P R+ V+L+DELD L
Sbjct: 401 EINGMRVTSANQAYSILWESLTGERVTPIHAMDLLDNRFTHASPNRSSCVVLMDELDQLV 460
Query: 267 TRRQDVLYSIMEWASHNTALLTVLAVANTMDLPERALASRVASRLGLTRLTFPPYTHTQL 326
T Q VLY+ W S + L V+AVANTMDLPER L++R++SRLGL+R+ F PYTHTQL
Sbjct: 461 THNQKVLYNFFNWPSLPHSRLIVVAVANTMDLPERILSNRISSRLGLSRVPFEPYTHTQL 520
Query: 327 QKIVATRLAGAN----VTPDAVQLIARKVASVSGDARRALTLCSRALELAGPEGAGLKE- 381
+ I+A RL + DA++ ARKVA+VSGDARRAL +C RA ELA + +
Sbjct: 521 EIIIAARLEAVRDDDVFSSDAIRFAARKVAAVSGDARRALDICRRASELAENKNGKVTPG 580
Query: 382 -VQQALAEAASSAPVRAIKSCSPAERLMLRAVAAEVERTGSDET 424
+ QA++E +S + +++ S +++ L A+ + R+G E+
Sbjct: 581 LIHQAISEMTASPLQKVLRNLSFMQKVFLCAIVNRMRRSGFAES 624
>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 107 bits (258), Expect = 3e-24
Identities = 77/280 (27%), Positives = 131/280 (46%), Gaps = 15/280 (5%)
Query: 149 GRESQMDEILSFVRSKLLDGTSGCIYISGVPGTGKTATVSSALQILKKEANLPEFQLVEV 208
GRE++ + SF R L G +Y+SG PGTGKT + + L + + P+ + +
Sbjct: 171 GRENEKSIVESFFRQHLDANAGGALYVSGAPGTGKTVLLHNVLDHVVSD--YPKVNVCYI 228
Query: 209 NGMRLAEPRQAFVQIYKQLTGKSVVWEQACSL-----LEKRFTNMGPRR-TPTVLLVDEL 262
N M + EP+ F +I+ ++ + ++ + + LE FT P ++++DE+
Sbjct: 229 NCMTINEPKAIFEKIHSKIVKEEILENEDHHINFQCELESHFTQSANELYNPVIIVLDEM 288
Query: 263 DALCTRRQDVLYSIMEWASHNTALLTVLAVANTMDLPERALASRVASRLGLTRLTFPPYT 322
D L R Q VLY++ EW S T+ L ++ +AN +D+ +R L + L+F PYT
Sbjct: 289 DHLIAREQQVLYTLFEWPSRPTSRLILVGIANALDMTDRFLPRLRTKHITPKLLSFTPYT 348
Query: 323 HTQLQKIVATRLAGANVTPDAVQLIA--RKVASVSGDARRALTLCSRALELAGPEGAGLK 380
++ I+ RL A T + + ++ VS D+ ++ + P L
Sbjct: 349 AQEISTIIKARLKTAATTSEKNNPFTPIKSISEVSDDSINVVSQHADETPFIHPAAIEL- 407
Query: 381 EVQQALAEAASSAPVR-AIKSCSPAERLMLRAVAAEVERT 419
A AASS +R A+ C A L R A+ + T
Sbjct: 408 ---CARKVAASSGDLRKALDICRHAIELAEREWKAQHDNT 444
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 34.3 bits (75), Expect = 0.040
Identities = 46/156 (29%), Positives = 67/156 (42%), Gaps = 16/156 (10%)
Query: 253 TPTVLLVDELDALCTRRQD------VLYSIMEWASHNTAL--LTVLAVANTMDLPERALA 304
+P+V+ DE+DAL R + V+ +++ AL + VLA N D+ + AL
Sbjct: 641 SPSVIFFDEIDALTANRGEDNSSDRVVAALLNELDGIEALRNVLVLAATNRPDMIDPALM 700
Query: 305 SRVASRLGLTRLTFPP--YTHTQLQKIVATRLAGANVTPDAVQLIARKVASVSGDARRAL 362
RL PP Q+ KI A ++ A + LIA K SG +
Sbjct: 701 R--PGRLDRLLYVGPPNFEARKQIVKIQAEKMKFAEDVD--LDLIAEKTEGCSG--AEVV 754
Query: 363 TLCSRALELAGPEGAGLKEVQQALAEAASSAPVRAI 398
LC A +A E KE+ QA + A A +AI
Sbjct: 755 ALCQEAGLIAMHEDLEAKEICQAHFKTALLALRKAI 790
>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 511
Score = 33.1 bits (72), Expect = 0.092
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 89 LMELQENSDDELPT-LIIKQHTLTTPKR--KQPLSKISDDTPKKILTFNDEQKDYVNENK 145
L EL ++++D L K T+T PK K K + P+ F++ E+K
Sbjct: 17 LRELSKSAEDLLSVDSHNKTVTITPPKHGLKHSRHKNRVNGPRTF-AFDECFAPSAPESK 75
Query: 146 ALPGRESQMDEILSFVRSKLLDGTSGCIYISGVPGTGKTATV 187
L G+E + + +L+G + C G GTGKT +V
Sbjct: 76 NLSGQEDVYESTGPLLVKSILEGFNSCFITYGQKGTGKTYSV 117
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 31.1 bits (67), Expect = 0.37
Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 14/111 (12%)
Query: 256 VLLVDELDALCTRRQDVLYSIMEWASHNTALLTVLAVANTMDLPERALASRVASRLGLTR 315
++++DE DA+ Q+ L ++E + N + + N ++ A+ SR TR
Sbjct: 123 MIILDEADAMTLAAQNALRRVIEKYTKN---VRFCIICNYINKISPAIQSR------CTR 173
Query: 316 LTFPPYTHTQLQKIV--ATRLAGANVTPDAVQLIARKVASVSGDARRALTL 364
F P +++K V + N+ PDA + R GD R+AL +
Sbjct: 174 FRFQPLPPKEIEKTVDHVIQSEHCNIDPDAKMAVLR---LSKGDMRKALNI 221
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 30.7 bits (66), Expect = 0.49
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 175 ISGVPGTGKTATVSSALQIL---KKEANLPEFQLVEVNGM 211
I G+PGTGKT T+SS ++ L KK+ L F + V+ +
Sbjct: 953 ILGMPGTGKTTTISSLIRSLLAKKKKILLTSFTHLAVDNI 992
>SPAC23D3.02 |rfc2||DNA replication factor C complex subunit
Rfc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 30.7 bits (66), Expect = 0.49
Identities = 66/278 (23%), Positives = 110/278 (39%), Gaps = 36/278 (12%)
Query: 152 SQMDEILSFVRSKLLDGTSGCIYISGVPGTGKTATVSSALQILKKEANLPEFQLVEVNGM 211
S + + ++ LL + G PGTGKT+T+ + L +E P+ V +
Sbjct: 34 SSQESTVQVLKKTLLSNNLPHMLFYGSPGTGKTSTILA----LSRELFGPQLMKSRVLEL 89
Query: 212 RLAEPRQAFVQIYKQLTGKSVVWEQACSLLEKRFTNM--GPRRTP-TVLLVDELDALCTR 268
++ R G S++ E+ S + TN G P ++++DE D++
Sbjct: 90 NASDER-----------GISIIREKVKSFAKTTVTNKVDGYPCPPFKIIILDEADSMTQD 138
Query: 269 RQDVLYSIMEWASHNTALLTVLAVANTMDLPERALASRVASRLGLTRLTFPPYTHTQLQK 328
Q L ME + T + N M L+SR ++ F P + + K
Sbjct: 139 AQAALRRTMESYARITRF---CLICNYMTRIIDPLSSR------CSKYRFKPLDNENMVK 189
Query: 329 IVATRLAGANVTPDAVQLIARKVASVSGDARRALTLCSRALELAGPEGAGLKEVQQALAE 388
+ A V+ + ++ V GD R+A+T A L + V++ LA
Sbjct: 190 RLEFIAADQAVSMEP-GVVNALVECSGGDMRKAITFLQSAANLHQGTPITISSVEE-LAG 247
Query: 389 AASSAPVRAI------KSCSPAERLMLRAVAAEVERTG 420
A +R++ K+ S E L R VAAE TG
Sbjct: 248 AVPYNIIRSLLDTAYTKNVSNIETLS-RDVAAEGYSTG 284
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 30.7 bits (66), Expect = 0.49
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 151 ESQMDEILSFVRSKLLDGTSGCIYISGVPGTGKTATVSS 189
E +E+ ++S + DG + CI+ G G+GKT T+SS
Sbjct: 538 EDVFNELSQLIQSAM-DGYNVCIFAYGQTGSGKTHTMSS 575
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 29.9 bits (64), Expect = 0.86
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 3 TNTTKSGTPQTPSSLLKKLSRVSISEQRDWSVTKNEGSKL 42
T +TKS P TP + L+ +S + DW V +N G +L
Sbjct: 635 TRSTKSTNPMTPLNWLRGISMGRLG-NADWEVPQNLGEEL 673
>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
Klp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 29.5 bits (63), Expect = 1.1
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 8/80 (10%)
Query: 113 PKRKQPLSKISDDTPKKILTFNDEQKDYVNENKALPGRESQMDEILSFVRSKLLD----G 168
P + PL+K+ K +L +D L G E+ +++ LLD G
Sbjct: 70 PPEENPLAKVQ----KSLLPAGKRFRDVRYAFDRLFGEEASQEDVYKGTTEPLLDSVLQG 125
Query: 169 TSGCIYISGVPGTGKTATVS 188
+ ++ G G GKT T+S
Sbjct: 126 YNATVFAYGATGCGKTHTIS 145
>SPBC2F12.13 |klp5|sot1|kinesin-like protein
Klp5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 883
Score = 29.5 bits (63), Expect = 1.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 165 LLDGTSGCIYISGVPGTGKTATVSSALQ 192
+LDG + I+ G G GKT T+S +Q
Sbjct: 132 ILDGFNATIFAYGATGCGKTHTISGTMQ 159
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 29.1 bits (62), Expect = 1.5
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 234 WEQACSLLEKRFTNMGPRRTPTVLLVDELDALCTRRQD 271
W L ++ M + P+++ +DE+D+LC R +
Sbjct: 202 WMGESERLVRQLFEMAREQKPSIIFIDEIDSLCGSRSE 239
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 29.1 bits (62), Expect = 1.5
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 241 LEKRFTNMGPRRTPTVLLVDELDALCTRRQD 271
L ++ N +P+++ +DE+DA+ T+R D
Sbjct: 272 LVRQLFNAAEEHSPSIVFIDEIDAIGTKRYD 302
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 28.7 bits (61), Expect = 2.0
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 4 NTTKSGTPQTPSSLLKKLSRVSISEQRDWSVTKNEGSK 41
N SG P P+ ++ S V E++DW+VT N +K
Sbjct: 236 NGKVSGNPPYPAEIIPT-SNVPNREEKDWTVTSNVPNK 272
>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 457
Score = 28.3 bits (60), Expect = 2.6
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 8/97 (8%)
Query: 111 TTPKRKQPLSKISDDTPKKILTFNDEQKDYVNENKAL--PGRESQMDEILSFVRSKLLDG 168
T+P R + S + K T D D+V+E+ A P R +E LS ++
Sbjct: 64 TSPTRNKRSGSSSQEYKKSSGTRGDGANDFVDEDPAFIPPARILFPEEKLSMEWDNIMPN 123
Query: 169 TSGCIYISGVPGTGKTATVSSALQILKKEANLPEFQL 205
G + + G T ++S LQ++ + L ++ L
Sbjct: 124 APGLVNL------GNTCFMNSVLQLMTQTPPLVQYLL 154
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 28.3 bits (60), Expect = 2.6
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 248 MGPRRTPTVLLVDELDALCTRRQDVLYSIMEWASHNTALLTVLAVANTMD 297
+ ++P ++ +DELDA+ T+R D E A T+L + N +D
Sbjct: 273 LAKEKSPAIIFIDELDAIGTKRFD-----SEKAGDREVQRTMLELLNQLD 317
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 27.5 bits (58), Expect = 4.6
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 248 MGPRRTPTVLLVDELDALCTRRQD 271
M P ++ +DE+DA+ T+R D
Sbjct: 222 MARENAPAIIFIDEIDAIATKRFD 245
>SPAC926.09c |fas1||fatty acid synthase beta subunit
Fas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2073
Score = 27.5 bits (58), Expect = 4.6
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 200 LPEFQLVEVNGMRLAEPRQAFVQIYKQLTGKSVVWEQAC 238
+P + + +R +P + + + +T K V WE+AC
Sbjct: 448 VPVYSTDDAGDLRFEQPSKLLLALAVMITEKVVHWEEAC 486
>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 27.5 bits (58), Expect = 4.6
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 152 SQMDEILSFVRSKLLDGTSGCIYISGVPGTGKTATVSS 189
S +EI ++S + DG + I+ G G+GKT T+SS
Sbjct: 551 SVFEEISQLIQSAI-DGYNVSIFAYGQTGSGKTYTMSS 587
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 27.1 bits (57), Expect = 6.0
Identities = 24/102 (23%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 79 VSQTNLEEVLLMELQENSDDELPTLIIKQHTLTTPKRKQPLSKISDDTPKKI-LTFNDEQ 137
V+ +LL EL D++ ++ + P+ K+ K+ DD+ + + ++
Sbjct: 2602 VTYVKYATILLQELTIEIDEDFAFAALEYIKDSVPRSKRNTGKMFDDSLELVPENLGNDL 2661
Query: 138 KDYVNENKALPGRESQMDEILSFVRSKLLDGTSGCIYISGVP 179
K Y + L + ++M LSFVR++ ++ T G + S P
Sbjct: 2662 KVYF---EVLNLQPTEMH--LSFVRTERINNTDGTVVSSHNP 2698
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.128 0.353
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,992,405
Number of Sequences: 5004
Number of extensions: 75156
Number of successful extensions: 244
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 219
Number of HSP's gapped (non-prelim): 30
length of query: 500
length of database: 2,362,478
effective HSP length: 76
effective length of query: 424
effective length of database: 1,982,174
effective search space: 840441776
effective search space used: 840441776
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 56 (26.6 bits)
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