Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002754-TA|BGIBMGA002754-PA|IPR001998|Xylose isomerase,
IPR003959|AAA ATPase, central region, IPR003593|AAA ATPase
(500 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0609 + 4404287-4405023,4405496-4405631,4405724-4405876,440... 210 1e-54
01_06_1387 + 36944138-36944147,36944272-36944333,36944825-369448... 90 3e-18
01_06_0281 + 28155039-28155160,28155243-28155333,28155822-281558... 53 5e-07
06_03_0551 - 22027441-22028224,22029015-22029344,22029510-220297... 44 4e-04
01_03_0147 - 13125065-13126679,13126802-13127664 33 0.40
04_03_0376 + 15105874-15106230,15109207-15111573 33 0.70
04_04_1690 - 35382241-35382553,35382614-35382933,35383601-353851... 32 0.92
11_06_0143 + 20589574-20589684,20590256-20590873,20590943-205910... 32 1.2
02_05_0182 + 26530799-26530852,26531677-26532927,26533250-265333... 32 1.2
06_03_0436 + 20755816-20756025,20756124-20756240,20756942-207571... 31 1.6
05_04_0226 + 19215091-19215172,19215281-19215394,19215508-192155... 31 1.6
05_01_0155 + 1043045-1043240,1043325-1043401,1043963-1044092,104... 31 1.6
04_04_0918 - 29411239-29411373,29412276-29412526,29412772-294130... 31 1.6
12_02_0689 + 22160627-22160720,22161331-22161425,22161679-221618... 31 2.1
11_06_0632 + 25674807-25675477,25676472-25677861,25677948-256780... 31 2.8
11_03_0147 - 10758318-10758330,10758786-10759291 31 2.8
10_08_0448 + 18015609-18016052,18017147-18017248,18017332-180174... 31 2.8
06_03_1131 + 27872870-27872958,27873036-27873281,27874058-278741... 31 2.8
02_02_0157 - 7280335-7280541,7280656-7280762,7280918-7281097,728... 31 2.8
01_06_0675 + 31092877-31092916,31093349-31093503,31093570-310936... 31 2.8
09_02_0569 - 10752756-10753164,10753229-10753644,10754149-107553... 30 3.7
03_02_0712 - 10600147-10600196,10600257-10600378,10600993-106014... 30 3.7
02_05_0922 - 32742863-32742958,32743081-32743136,32743253-327433... 30 3.7
02_05_0510 + 29637160-29637506,29637714-29637775,29638047-296381... 30 3.7
02_01_0450 + 3234378-3234834,3235118-3235223,3235722-3235920,323... 30 3.7
02_01_0234 + 1559899-1559969,1561281-1561333,1561673-1561787,156... 30 3.7
12_02_1113 - 26165074-26165889,26166077-26166202,26166294-261664... 30 4.9
10_07_0124 - 13085820-13085997,13086235-13086362,13086475-130865... 30 4.9
07_03_1298 - 25592788-25592890,25593126-25593229,25593747-255938... 30 4.9
07_03_0902 - 22435692-22436156,22436684-22436923,22437228-224373... 30 4.9
05_06_0116 - 25719030-25719458,25720138-25720301,25720390-257206... 30 4.9
04_04_1155 - 31308704-31309051,31309301-31309451,31309532-313097... 30 4.9
03_05_0092 - 20714102-20717902 30 4.9
01_01_0268 - 2214923-2215048,2215131-2215286,2215371-2215469,221... 30 4.9
06_01_1188 + 10219546-10219664,10220855-10223660 29 6.5
03_05_0051 - 20288456-20291728 29 6.5
02_05_0693 - 30977323-30977421,30977783-30977843,30978874-309789... 29 6.5
11_06_0553 - 24920428-24921057,24921149-24921276,24921372-249214... 29 8.6
06_01_0608 - 4399252-4399894,4401640-4402427 29 8.6
04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865... 29 8.6
04_01_0261 + 3516461-3516629,3517729-3517823,3518724-3518834,351... 29 8.6
03_02_0057 - 5312812-5312852,5313061-5313201,5314159-5314345 29 8.6
>06_01_0609 +
4404287-4405023,4405496-4405631,4405724-4405876,
4405985-4406128,4406224-4406375,4406453-4406552,
4406653-4406775,4406876-4407037,4407190-4407247,
4407324-4407502,4408294-4408402,4408567-4408637,
4408891-4408986,4409727-4409803,4410983-4411066,
4411473-4411607,4411744-4411819,4413072-4413167,
4413580-4413671,4413745-4413868,4413966-4414052
Length = 996
Score = 210 bits (514), Expect = 1e-54
Identities = 118/308 (38%), Positives = 186/308 (60%), Gaps = 25/308 (8%)
Query: 145 KALPGRESQMDEILSFVRSKLL-DGTSG-CIYISGVPGTGKTATVSSALQILKKE---AN 199
K+LP R+ +M+EI +FV+ + D G C+YI GVPGTGKT +V + ++ L+ E N
Sbjct: 434 KSLPCRDKEMEEISAFVKDAICNDQCLGRCLYIHGVPGTGKTMSVLAVMRRLRSELDSGN 493
Query: 200 LPEFQLVEVNGMRLAEPRQAFVQIYKQLTGKSVVWEQACSLLEKRF---TNMGPRRT-PT 255
L + +E+NG++LA P + IY+QL+G V W++A L + F T +G + P
Sbjct: 494 LRPYSFIEINGLKLASPENIYKVIYEQLSGHRVGWKKALHYLTEHFSGGTKIGKQANQPI 553
Query: 256 VLLVDELDALCTRRQDVLYSIMEWASHNTALLTVLAVANTMDLPERALASRVASRLGLTR 315
+LL+DELD L TR Q VLY+I++W + + L V+ +ANTMDLPE+ L R++SR+G+ R
Sbjct: 554 ILLIDELDLLLTRNQSVLYNILDWPTRPNSNLVVIGIANTMDLPEK-LLPRISSRMGIQR 612
Query: 316 LTFPPYTHTQLQKIVATRLAGANVTPD-AVQLIARKVASVSGDARRALTLCSRALELA-- 372
L F PY + QLQ+I+ +RL G + D A++ +RKVA++SGDARRAL +C RA E A
Sbjct: 613 LCFGPYNYRQLQEIITSRLKGIDAFEDQAIEFASRKVAAMSGDARRALEICRRAAEFADY 672
Query: 373 ------------GPEGAGLKEVQQALAEAASSAPVRAIKSCSPAERLMLRAVAAEVERTG 420
G + +++ A+ E + ++ +K+C +++L A+ E+ R+G
Sbjct: 673 RVKQSGHTSVNRGKNVVCMGDIEAAIQEVFQAPHIQVMKNCPKFGKIILVAMVHELYRSG 732
Query: 421 SDETTLSR 428
E +
Sbjct: 733 LGEVMFDK 740
>01_06_1387 +
36944138-36944147,36944272-36944333,36944825-36944865,
36945217-36945286,36946146-36946826,36946907-36946981,
36947057-36947163,36947264-36947370,36947463-36947522,
36947616-36947689,36947788-36947838,36948009-36948058,
36948079-36948123,36948161-36948221,36948284-36948349,
36948700-36948789,36948875-36948940,36949039-36949134,
36949219-36949308,36949371-36949388
Length = 639
Score = 90.2 bits (214), Expect = 3e-18
Identities = 63/227 (27%), Positives = 111/227 (48%), Gaps = 11/227 (4%)
Query: 150 RESQMDEILSFVRSKLLDGTSGCIYISGVPGTGKTATVSSALQILKK---EANLPEFQLV 206
R+ + +L F + + SG +Y+ G PGTGKT +++ + + + E + +
Sbjct: 238 RDDEQSRVLEFCKGCVEQERSGSLYVCGCPGTGKTLSINKVKESVARWADETGMETPDAL 297
Query: 207 EVNGMRLAEPRQAFVQIYK--QLTGKSVVWEQACSLLEKRFTN--MGPRRTPTVLLVDEL 262
+N LA+ + F +I Q K+ L+ F++ PRR +++VDE+
Sbjct: 298 SINCTSLAKTHEIFSKILAKFQTRKKATCKLSPLQQLQTMFSHKESAPRRM-LLVVVDEM 356
Query: 263 DALCTRRQDVLYSIMEWASHNTALLTVLAVANTMDLPERALASRVASRLGLTRLTFPPYT 322
D L TR + VL+ + ++ + ++ +AN +DL +R L + +TF Y+
Sbjct: 357 DYLITRDRAVLHDLFMLTTYQFSRCILIGIANAIDLADRFLPKLESLNCKPLVVTFRAYS 416
Query: 323 HTQLQKIVATRLAGAN---VTPDAVQLIARKVASVSGDARRALTLCS 366
Q+ I+ RL P A++ ARKVA+ SGD R+AL +CS
Sbjct: 417 KDQISDIIKHRLKVLEYDVFEPLALEFCARKVAAASGDMRKALGVCS 463
>01_06_0281 +
28155039-28155160,28155243-28155333,28155822-28155878,
28156174-28156221,28156399-28156449,28156529-28156572,
28156673-28156736,28156927-28157013,28157304-28157395,
28157489-28157539,28158592-28158641,28158717-28158781,
28158876-28159019,28159156-28159197
Length = 335
Score = 53.2 bits (122), Expect = 5e-07
Identities = 46/210 (21%), Positives = 91/210 (43%), Gaps = 9/210 (4%)
Query: 151 ESQMDEILSFVRSKLLDGTSGCIYISGVPGTGKTATVSSALQILKKEANLPEFQLVEVNG 210
++ ++ V S + + + + + G G GK A V L LKK+ + ++ +NG
Sbjct: 37 DTNYSKLKYLVASSVSEACNNSVLLLGPRGCGKAAVVDMVLDDLKKD-HPDAISVIRLNG 95
Query: 211 MRLAEPRQAFVQIYKQLT-------GKSVVWEQACSLLEKRFTNMGPRRTPTVLLVDELD 263
M ++ A +I +QL K + + G + +++E D
Sbjct: 96 MLHSDDNCATKEIARQLCLEHQLSFSKMASSDDNTEFMIDMLRECGLAHKTIIFVLEEFD 155
Query: 264 ALCTRRQDVLYSIMEWASHNTALLTVLAVANTMDLPERALASRVASRLGLTRLTFPPYTH 323
+Q +LYS+++ T+ V+ V+ +D ++ L RV SR +L F P +
Sbjct: 156 LFAQGKQRLLYSLLDAMQSLTSQAVVIGVSCRLD-ADQLLEKRVRSRFSHRKLLFVPSSV 214
Query: 324 TQLQKIVATRLAGANVTPDAVQLIARKVAS 353
LQ+++ LA +P +L ++ +S
Sbjct: 215 DSLQRLMEHLLALPEDSPLPTKLEDKEKSS 244
>06_03_0551 -
22027441-22028224,22029015-22029344,22029510-22029778,
22030530-22031453,22037761-22038360,22040049-22040267
Length = 1041
Score = 43.6 bits (98), Expect = 4e-04
Identities = 16/51 (31%), Positives = 34/51 (66%)
Query: 139 DYVNENKALPGRESQMDEILSFVRSKLLDGTSGCIYISGVPGTGKTATVSS 189
D+ +N+ + GR+S++D++ + ++ + T + + G+PGTG+TA VS+
Sbjct: 93 DWSGKNRLIIGRDSEVDKLFNLIKDRSHTNTPHVVSVWGIPGTGRTALVSN 143
>01_03_0147 - 13125065-13126679,13126802-13127664
Length = 825
Score = 33.5 bits (73), Expect = 0.40
Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Query: 167 DGTSGC--IYISGVPGTGKTATVSSALQILKKE 197
DGT+G + ISG+PG GKT ++ L+ LK+E
Sbjct: 202 DGTTGLKVVSISGMPGAGKTTLATAVLRRLKEE 234
>04_03_0376 + 15105874-15106230,15109207-15111573
Length = 907
Score = 32.7 bits (71), Expect = 0.70
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 149 GRESQMDEILSFVRSKLLDGTSGC---IYISGVPGTGKTATVSSALQILKKEAN 199
GR+ +EI+S +R + C I I G+PG+GKT T++ + ++EAN
Sbjct: 192 GRDKDREEIISMLRDENQSSADRCFSVIGIHGIPGSGKT-TLAQYVCEYEEEAN 244
>04_04_1690 -
35382241-35382553,35382614-35382933,35383601-35385164,
35385254-35385372,35385701-35385811,35386068-35386595,
35386702-35386881,35386957-35387556,35387646-35388066,
35388183-35388280,35388372-35389260,35389366-35389544,
35389647-35389763,35389862-35389952,35390578-35390753
Length = 1901
Score = 32.3 bits (70), Expect = 0.92
Identities = 18/45 (40%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 379 LKEVQQALAEAASS-APVRAIKSCSPAERLMLRAVAAEVERTGSD 422
LK V+ A AEA S+ AP A+K+ A ++++ A+EV +TG++
Sbjct: 447 LKAVRAAEAEARSANAPDEAVKAAGDAAAELVKSAASEVWKTGNN 491
>11_06_0143 +
20589574-20589684,20590256-20590873,20590943-20591010,
20591159-20591234,20591311-20591372,20591452-20591603,
20591889-20592052,20592129-20592317,20592417-20592538,
20592620-20592827,20593238-20593291,20593457-20593626,
20594265-20594355,20595405-20595529,20596372-20596444,
20596822-20596914,20597482-20597728,20598305-20598364,
20598461-20598590,20599008-20599014
Length = 939
Score = 31.9 bits (69), Expect = 1.2
Identities = 51/199 (25%), Positives = 87/199 (43%), Gaps = 24/199 (12%)
Query: 168 GTSGCIYISGVPGTGKTATVSSALQILKKEANLPEFQLVEVNGMRLAEPR-QAFVQIYKQ 226
G + +SG PG GKT T Q+L Q +EVN ++ R +A +I K
Sbjct: 448 GAKKAVLLSGPPGIGKTTTAKVVSQML-------GLQAIEVNA---SDSRGKADSKIEKG 497
Query: 227 LTGK-SVVWEQACSLLEKRFTNMGPRRTPTVLLVDELDALCTRRQDVLYSIMEWASHNTA 285
+ G S ++ S ++N +R VL++DE+D + + + ++ AS +
Sbjct: 498 VGGSTSNSIKELISNATLNYSNNRLKRPKAVLVMDEVDGMSAGDRGGVADLI--ASIKMS 555
Query: 286 LLTVLAVANTMDLPERALASRVASRLGLTRLTFPPYTHTQLQK--IVATRLAGANVTPDA 343
+ ++ + N D + L S V L L F T Q+ K + + G +A
Sbjct: 556 KIPIICICN--DRYSQKLKSLVNYCL---LLNFRKPTKQQMGKRLMEIAKKEGLQAQENA 610
Query: 344 VQLIARKVASVSGDARRAL 362
++ +A + V GD R AL
Sbjct: 611 MEELAER---VHGDIRMAL 626
>02_05_0182 +
26530799-26530852,26531677-26532927,26533250-26533335,
26533673-26533733
Length = 483
Score = 31.9 bits (69), Expect = 1.2
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Query: 321 YTHTQLQKIVATRLAGANVTPDAVQLIARKVASVSGDARRALTLCSRALELAGPEGAGLK 380
Y L+++ G N +A+ +A+ S+ G A C+R L+ GPE K
Sbjct: 384 YYKKDLERMEVEERQGQNFV-EALLFLAKHCKSI-GRFEEAEHYCTRLLDYTGPERETAK 441
Query: 381 EVQQALAEAASSAPVRAI 398
+ Q L A S P+ I
Sbjct: 442 SILQGLKRAQSVLPLMDI 459
>06_03_0436 +
20755816-20756025,20756124-20756240,20756942-20757137,
20757393-20757544,20757653-20757736,20757848-20757925,
20757958-20758116,20758219-20758251,20759119-20759826,
20759917-20759998,20760093-20760449,20760586-20760692,
20760796-20761001,20761480-20761623,20761715-20761800,
20762120-20762283,20762559-20763119
Length = 1147
Score = 31.5 bits (68), Expect = 1.6
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 144 NKALPGRESQMD---EILSFVRSKLLDGTSGCIYISGVPGTGKTATVSSALQILKKE 197
NK L SQ + EI +RS +LDG + CI+ G G+GKT T++ +K+
Sbjct: 716 NKVLGPSASQDEVFKEIQPLIRS-VLDGYNVCIFAYGQTGSGKTYTMTGPENATEKD 771
>05_04_0226 +
19215091-19215172,19215281-19215394,19215508-19215590,
19215682-19215820,19215862-19216191,19216414-19216693,
19216795-19216956,19217134-19217349,19217458-19217495,
19217597-19217760,19217833-19217946,19218042-19218083,
19218180-19218983
Length = 855
Score = 31.5 bits (68), Expect = 1.6
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 150 RESQMDEILSFVRSKLLDGTSGCIYISGVPGTGKTATV 187
+E+ E L VRS ++DG + CI+ G GTGKT T+
Sbjct: 249 QETVFAESLPVVRS-VMDGFNVCIFAYGQTGTGKTFTM 285
>05_01_0155 +
1043045-1043240,1043325-1043401,1043963-1044092,
1044376-1044473,1045622-1045729,1045748-1045800,
1046876-1047080
Length = 288
Score = 31.5 bits (68), Expect = 1.6
Identities = 22/76 (28%), Positives = 34/76 (44%)
Query: 344 VQLIARKVASVSGDARRALTLCSRALELAGPEGAGLKEVQQALAEAASSAPVRAIKSCSP 403
V+ +A +A V+ R L+LC E A EV++A+AEA S A ++
Sbjct: 40 VEDVAAALAGVAALQARLLSLCRSLRERGAAAAAAAGEVERAVAEAESYASKEQVRYNRF 99
Query: 404 AERLMLRAVAAEVERT 419
LR +E+T
Sbjct: 100 LSPRALREHIKNIEKT 115
>04_04_0918 -
29411239-29411373,29412276-29412526,29412772-29413009,
29413133-29414251,29414540-29415106
Length = 769
Score = 31.5 bits (68), Expect = 1.6
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 152 SQMDEILSFVRSKLLDGTSGCI-YISGVPGTGKTATVSSALQILKK 196
SQ D IL+ + S + +S I G PGTGKT T+S L ++++
Sbjct: 220 SQNDAILNCISSMHSNNSSSSFSLIWGPPGTGKTKTISVLLWLMRE 265
>12_02_0689 +
22160627-22160720,22161331-22161425,22161679-22161822,
22162256-22162513,22162595-22162666,22162759-22162824,
22163212-22163346,22163562-22163697,22163807-22163983,
22164086-22164192,22164281-22164421,22164604-22164740,
22164823-22165076,22165158-22165300,22165423-22165581,
22166049-22166461,22167369-22167474
Length = 878
Score = 31.1 bits (67), Expect = 2.1
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 150 RESQMDEILSFVRSKLLDGTSGCIYISGVPGTGKTATVSSALQILKKEA 198
+E ++ +RS +LDG + CI+ G G+GKT T+S ++L +E+
Sbjct: 392 QEEVFSDMQPLIRS-VLDGFNVCIFAYGQTGSGKTFTMSGP-KVLTEES 438
>11_06_0632 +
25674807-25675477,25676472-25677861,25677948-25678083,
25678185-25678282,25678470-25678535,25678699-25678827,
25679570-25679746,25680576-25680614
Length = 901
Score = 30.7 bits (66), Expect = 2.8
Identities = 34/146 (23%), Positives = 52/146 (35%), Gaps = 5/146 (3%)
Query: 324 TQLQKIVATRLAGANVTPDAVQLIARKVASVSGDARRALTLCSRALELAGPEGAGLKEVQ 383
TQ + A + A A K A ++ +AR ++ E A E A + VQ
Sbjct: 566 TQRAQRAAVQRAQQEARERAAAEAKEKAARIAAEARERAASEAKERERAAAERAAAERVQ 625
Query: 384 QALAEAASSAPVRAIKSCSPAERLMLRAVAAEVERTGSDETTLSRXXXXXXXXXXXDGRP 443
Q + A A V + ER A AA E+ S + S + P
Sbjct: 626 QEARKRAERAAVER-AAAEARERQAAAAAAAAREKQSSADDLES----FFGAGARANSAP 680
Query: 444 YRSAPNIRAPTPSQAQAICARLGAMR 469
+ P + + SQ Q+ G+ R
Sbjct: 681 KQRTPTVDSMFDSQPQSRATTNGSQR 706
>11_03_0147 - 10758318-10758330,10758786-10759291
Length = 172
Score = 30.7 bits (66), Expect = 2.8
Identities = 28/73 (38%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
Query: 352 ASVSGDA--RRALTLCSRALELAGPEGAGLKEVQQALAEAASSAPV----RAIKSCSPAE 405
ASVS + R LTLC A LAGP G V A + P + CS A
Sbjct: 45 ASVSSASAPRPPLTLCPLAHALAGPSPFGSAPVGPATVSLGLAVPALIGSTPVALCSVAA 104
Query: 406 RLMLRAVAAEVER 418
L+L AVA E +R
Sbjct: 105 ALLL-AVAVESQR 116
>10_08_0448 +
18015609-18016052,18017147-18017248,18017332-18017475,
18017555-18017705,18017793-18017820,18018456-18018621,
18018701-18018764,18019320-18019423,18019572-18019710,
18020114-18020232,18020333-18020485,18020565-18020654,
18020952-18021029,18021671-18021829,18021914-18022117,
18022209-18022414,18022495-18022630,18022859-18022898,
18023329-18023408,18023569-18024228
Length = 1088
Score = 30.7 bits (66), Expect = 2.8
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 128 KKILTFNDEQKD-YVNENKALPGRESQMDEILSFVRSKLLDGTSGCIYISGVPGTGKTAT 186
KK+ + +E D Y N+ K P + D L R D + I ISG G GKT T
Sbjct: 244 KKVPLYGNEYIDAYRNKTKDSPHVYAIADSAL---REMKRDEVNQSIIISGESGAGKTET 300
Query: 187 VSSALQIL 194
A+Q L
Sbjct: 301 AKIAMQYL 308
>06_03_1131 +
27872870-27872958,27873036-27873281,27874058-27874163,
27874665-27875209,27875455-27875914,27876234-27876319,
27877092-27877194
Length = 544
Score = 30.7 bits (66), Expect = 2.8
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Query: 321 YTHTQLQKIVATRLAGANVTPDAVQLIARKVASVSGDARRALTLCSRALELAGPEGAGLK 380
Y L+++ G N +A+ +A+ S+ G A C+R L+ GPE K
Sbjct: 431 YYKKDLERMEVEERQGQNFV-EALLFLAKHCKSI-GRFEEAEHYCTRLLDYTGPERETAK 488
Query: 381 EVQQALAEAASSAPVRAI 398
+ Q L + S P+ I
Sbjct: 489 SILQGLKRSQSVLPLMDI 506
>02_02_0157 -
7280335-7280541,7280656-7280762,7280918-7281097,
7281182-7281277,7281378-7281459,7281553-7283037,
7283376-7283450,7283521-7283598,7283708-7283791,
7283885-7283965,7284073-7284291,7284398-7284648,
7284748-7284796
Length = 997
Score = 30.7 bits (66), Expect = 2.8
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 150 RESQMDEILSFVRSKLLDGTSGCIYISGVPGTGKTATVSSALQILKKE 197
+++ +I +RS +LDG + CI+ G G+GKT T+ + +KE
Sbjct: 893 QDAVFKDIQPLIRS-VLDGYNVCIFAYGQTGSGKTYTMMGPEKATEKE 939
>01_06_0675 +
31092877-31092916,31093349-31093503,31093570-31093677,
31094283-31094487,31094858-31094955,31095052-31095135,
31095227-31095304,31095462-31095554,31095646-31095675,
31095932-31096273,31096353-31096434,31096527-31096622,
31096728-31096907,31097002-31097108,31097207-31097308,
31097611-31097666,31097749-31098002,31098077-31098240,
31098564-31098747,31098825-31098969,31099561-31099661,
31099803-31099870
Length = 923
Score = 30.7 bits (66), Expect = 2.8
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 144 NKALPGRESQMD---EILSFVRSKLLDGTSGCIYISGVPGTGKTATVS 188
NK SQ + +I +RS +LDG + CI+ G G+GKT T+S
Sbjct: 521 NKVFGTHSSQAEVFSDIQPLIRS-VLDGFNVCIFAYGQTGSGKTYTMS 567
>09_02_0569 -
10752756-10753164,10753229-10753644,10754149-10755349,
10756770-10756991,10757615-10757767,10757883-10758034,
10758142-10758222,10758353-10758598,10759394-10759516
Length = 1000
Score = 30.3 bits (65), Expect = 3.7
Identities = 20/66 (30%), Positives = 26/66 (39%)
Query: 141 VNENKALPGRESQMDEILSFVRSKLLDGTSGCIYISGVPGTGKTATVSSALQILKKEANL 200
V LP DE + + GT+G I I G+ G+GKT + I A
Sbjct: 446 VGREMPLPPYIVGQDEYKDKIVGSIKQGTTGTIGICGMGGSGKTTLLKQLNNIFSCAAET 505
Query: 201 PEFQLV 206
EF V
Sbjct: 506 HEFDHV 511
>03_02_0712 -
10600147-10600196,10600257-10600378,10600993-10601489,
10601663-10601851,10601936-10602099,10602193-10602446,
10602535-10602691,10602830-10602995,10603121-10603227,
10603305-10603478,10603594-10603689,10603781-10603862,
10603948-10604058,10604253-10604309,10604638-10604709,
10604799-10605041,10605195-10605341,10605381-10605616,
10605745-10605865
Length = 1014
Score = 30.3 bits (65), Expect = 3.7
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 161 VRSKLLDGTSGCIYISGVPGTGKTATVSSALQILKKEANLPEFQLVEVNGMRLAEPRQ-A 219
+RS +LDG + CI+ G G+GKT T+S + ++ + L ++ +LAE R+ A
Sbjct: 457 IRS-VLDGYNVCIFAYGQTGSGKTYTMSGPKNMTEQTQGVNYRALSDL--FKLAEQRKGA 513
Query: 220 FV 221
F+
Sbjct: 514 FI 515
>02_05_0922 -
32742863-32742958,32743081-32743136,32743253-32743382,
32743768-32743849,32744038-32744227,32744290-32744369,
32744769-32744985,32745740-32745923
Length = 344
Score = 30.3 bits (65), Expect = 3.7
Identities = 46/197 (23%), Positives = 85/197 (43%), Gaps = 26/197 (13%)
Query: 173 IYISGVPGTGKTATVSSALQILKKEANLPEFQLVEVNGMRLAEPRQAFVQIYKQLTGKSV 232
+ + G PGTGKT+T+ + + K + ++E+N ++ R G V
Sbjct: 74 LLLYGPPGTGKTSTILAVAR--KLYGSQYGNMILELNA---SDER-----------GIDV 117
Query: 233 VWEQACSLLEKRFTNMGPRRTPTVLLVDELDALCTRRQDVLYSIMEWASHNTALLTVLAV 292
V +Q R + G +++ ++L+DE DA+ +D +++ S N LTV+
Sbjct: 118 VRQQIQDFASARSLSFGAKQSVKMVLLDEADAM---TKDAQFALRRATSSNLPHLTVIE- 173
Query: 293 ANTMDLPERALASRV-----ASRLGLTRLTFPPYTHTQLQKIVATRLAGANVTPDAVQLI 347
+T + + V A + TR F P T +++ + + + D L
Sbjct: 174 KHTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGTHVRERLKHIIQSEGLDVDDGGLT 233
Query: 348 ARKVASVSGDARRALTL 364
A V +GD R+AL +
Sbjct: 234 A-LVRLSNGDMRKALNI 249
>02_05_0510 +
29637160-29637506,29637714-29637775,29638047-29638161,
29638296-29638419,29638604-29638684,29639122-29639463,
29639562-29639728,29639810-29640639,29641103-29642568
Length = 1177
Score = 30.3 bits (65), Expect = 3.7
Identities = 20/72 (27%), Positives = 36/72 (50%)
Query: 226 QLTGKSVVWEQACSLLEKRFTNMGPRRTPTVLLVDELDALCTRRQDVLYSIMEWASHNTA 285
Q++G W QACS LE + + R T V+++ + A +DV ++ + A ++
Sbjct: 97 QVSGDPAQWLQACSDLENLKSVIQGRNTKLVVILVQSQAGDELSEDVTVALRKRAEIDSK 156
Query: 286 LLTVLAVANTMD 297
L VL + M+
Sbjct: 157 HLVVLVERDEME 168
>02_01_0450 +
3234378-3234834,3235118-3235223,3235722-3235920,
3236119-3236187,3236299-3236373,3236484-3236582,
3236694-3236864,3237394-3237519
Length = 433
Score = 30.3 bits (65), Expect = 3.7
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 15/85 (17%)
Query: 242 EKRFTN---MGPRRTPTVLLVDELDALC-----------TRRQDVLYSI-MEWASHNTAL 286
EK TN M P+++ +DE+D+LC +RR + + M+ HN
Sbjct: 203 EKLVTNLFQMARENAPSIIFIDEIDSLCGQRGEGNESEASRRVKTEFLVQMQGVGHNDDK 262
Query: 287 LTVLAVANTMDLPERALASRVASRL 311
+ VLA NT ++A+ R R+
Sbjct: 263 VLVLAATNTPYALDQAVRRRFDKRI 287
>02_01_0234 +
1559899-1559969,1561281-1561333,1561673-1561787,
1562073-1562195,1562558-1562729,1562815-1563000
Length = 239
Score = 30.3 bits (65), Expect = 3.7
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 174 YISGVPGTGKTATVSSALQILKKEANLPEFQLVEVNGMRLAEP---RQAFV-QIYKQLTG 229
YI G P TG T + + + +++ E +V N R F+ Q YKQ+ G
Sbjct: 122 YIQGAPLTGNTIATTDDILAVDTPSDIAEAVMVSTNDKSTQSGPTLRARFIGQGYKQVCG 181
Query: 230 KSVVW 234
++ VW
Sbjct: 182 RADVW 186
>12_02_1113 -
26165074-26165889,26166077-26166202,26166294-26166457,
26166539-26166576,26166670-26166885,26166984-26167145,
26167212-26167497,26167585-26167761,26167864-26167971,
26168076-26168175,26168283-26168359,26168608-26168803,
26169032-26169363,26169476-26169589,26169651-26169753
Length = 1004
Score = 29.9 bits (64), Expect = 4.9
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 150 RESQMDEILSFVRSKLLDGTSGCIYISGVPGTGKTATV 187
+E ++ + F S +LDG + CI+ G GTGKT T+
Sbjct: 402 QEKVFEKTVPFATS-VLDGYNVCIFAYGQTGTGKTFTM 438
>10_07_0124 -
13085820-13085997,13086235-13086362,13086475-13086550,
13086726-13086803,13086985-13087064,13087411-13087480,
13087730-13087887,13088225-13088315,13088379-13088455,
13088612-13088686,13088798-13089071,13089911-13090041,
13090154-13090323,13090413-13090971,13091077-13091127
Length = 731
Score = 29.9 bits (64), Expect = 4.9
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 254 PTVLLVDELDALCTRRQ--DVLYSIMEWASHNTALLTVLAVANTMDLPERALASRVASRL 311
P V+++D+L+ C+ +++ + EW + V+ +A T+D P + L+S RL
Sbjct: 280 PIVVVIDDLEQ-CSGDVLGELVMMLSEWVI-KIPIFFVMGIATTLDAPRKLLSSEDLQRL 337
Query: 312 GLTRLT 317
+LT
Sbjct: 338 EPCKLT 343
>07_03_1298 -
25592788-25592890,25593126-25593229,25593747-25593808,
25593957-25594065,25594215-25594355,25594707-25594769,
25594974-25595084,25596140-25596457
Length = 336
Score = 29.9 bits (64), Expect = 4.9
Identities = 37/152 (24%), Positives = 61/152 (40%), Gaps = 14/152 (9%)
Query: 173 IYISGVPGTGKTATVSSALQILKKEANLPEFQLVEVNGMRLAEPRQAFVQ-IYKQLTGKS 231
+ I GV GKT + I KE LP ++V G+ + A V+ ++ L G+
Sbjct: 153 VVILGVHKAGKTTLLEKVKSIYLKEEGLPHDRIVPTVGLNIGRIEDANVKLVFWDLGGQP 212
Query: 232 VVWEQACSLLEKRFTNMGPRRTPTVLLVDELDALCTRRQDVLYSIMEWASHNTAL--LTV 289
+ ++ EK + V+ V +D+ + S +E H+ L + +
Sbjct: 213 GL----RTIWEKYY-----EEAHAVIYV--IDSAAASSFEDAKSALEKVLHHEDLQGVPL 261
Query: 290 LAVANTMDLPERALASRVASRLGLTRLTFPPY 321
L AN +LP +A L L L PY
Sbjct: 262 LIFANKQELPAAVTEEELARHLHLKGLDERPY 293
>07_03_0902 -
22435692-22436156,22436684-22436923,22437228-22437349,
22437441-22437587,22437753-22437882,22437981-22438116,
22438223-22438428,22438644-22438844,22438999-22439157,
22439781-22439858,22440453-22440542,22440625-22440777,
22440873-22440991,22441190-22441328,22441422-22441525,
22441944-22441989,22442087-22442252,22442356-22442383,
22442460-22442610,22442686-22442829,22442912-22443013,
22443566-22444093
Length = 1217
Score = 29.9 bits (64), Expect = 4.9
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 138 KDYVNENKALPGRESQMDEILSFVRSKLL-DGTSGCIYISGVPGTGKTATVSSALQILKK 196
KD++++ + + + I +++ DG + I ISG G GKT T A+Q L
Sbjct: 279 KDFISQYRKKLNDDPHVYAIADLAFNEMRRDGVNQSIIISGESGAGKTETAKIAMQYLAT 338
Query: 197 --EANLPEFQLVEVNGM 211
+A E ++++ N +
Sbjct: 339 LGDARGMESEVLQTNAI 355
>05_06_0116 -
25719030-25719458,25720138-25720301,25720390-25720643,
25720727-25720782,25721032-25721169,25721315-25721421,
25721502-25721681,25721757-25721852,25721926-25722007,
25722084-25722425,25722666-25722695,25722788-25722880,
25722963-25723040,25723122-25723222,25723833-25724058,
25724647-25724760,25724855-25725009,25725515-25725554
Length = 894
Score = 29.9 bits (64), Expect = 4.9
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 156 EILSFVRSKLLDGTSGCIYISGVPGTGKTATVS 188
+I +RS +LDG + CI+ G G+GKT T+S
Sbjct: 518 DIQPLIRS-VLDGFNVCIFAYGQTGSGKTYTMS 549
>04_04_1155 -
31308704-31309051,31309301-31309451,31309532-31309763,
31309854-31310064,31310304-31310422,31310507-31310581,
31310789-31310990,31311075-31311454,31311569-31311633,
31311735-31311779,31312166-31312231,31312667-31312741,
31313022-31313093,31313659-31313727,31313813-31313884,
31313995-31314066,31314441-31314512,31314597-31314668,
31315091-31315162,31315279-31315474,31316094-31316202
Length = 924
Score = 29.9 bits (64), Expect = 4.9
Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 6/106 (5%)
Query: 386 LAEAASSAPVRAIKSCSPAERLMLRAVAAEVERTGSDETTLSRXXXXXXXXXXXDGRPYR 445
LA AA A A K+ P E L AV A++ + S T DG P
Sbjct: 18 LAAAAVQAQRVATKT-DPTEAAALNAVFAKLGQQASLSTATWNISGDPCTGAATDGTPID 76
Query: 446 SAPN----IRAPTPSQAQAICARLGAMRLLLLEPKPTEPRLLLNVS 487
PN I+ Q +C R+ +++ L+ T P+ L N++
Sbjct: 77 DNPNFNPAIKCDCTFQNNTVC-RITKLKIYALDVPGTIPQELRNLT 121
>03_05_0092 - 20714102-20717902
Length = 1266
Score = 29.9 bits (64), Expect = 4.9
Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 4/114 (3%)
Query: 136 EQKDYVNENKALPGRESQMDEILSFVR---SKLLDGTSGCIYISGVPGTGKTATVSSALQ 192
E DY + GRE+++++IL VR G + I GV G GKTA
Sbjct: 205 EAADYDQFQNDIFGRETEVEQILEKVRFSDDPHYRLGIGVLPIVGVEGVGKTALAQFIFH 264
Query: 193 ILKKEANLPEFQLVEVNGMRLAEPRQAFVQIYKQLTGKSVVWEQACSLLEKRFT 246
+A P V V+G + + VQ+ + G + E +L + T
Sbjct: 265 YEVVKAEFPVRMWVHVSG-EVQLKDELVVQMIHGVAGDAHEVEDIREILHEELT 317
>01_01_0268 -
2214923-2215048,2215131-2215286,2215371-2215469,
2215557-2215631,2215732-2215800,2216515-2216713,
2220162-2220267,2221117-2221588
Length = 433
Score = 29.9 bits (64), Expect = 4.9
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 12/90 (13%)
Query: 234 WEQACSLLEKRFTNMGPRRTPTVLLVDELDALCTRR------------QDVLYSIMEWAS 281
W L M P+++ +DE+D+LC +R + L M+
Sbjct: 203 WMGESEKLVANLFQMARENAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVG 262
Query: 282 HNTALLTVLAVANTMDLPERALASRVASRL 311
HN + VLA NT ++A+ R R+
Sbjct: 263 HNDDKVLVLAATNTPYALDQAVRRRFDKRI 292
>06_01_1188 + 10219546-10219664,10220855-10223660
Length = 974
Score = 29.5 bits (63), Expect = 6.5
Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 3/114 (2%)
Query: 117 QPLSKIS-DDTPKKILTFNDEQKDYVNENKALPGRESQMDEILSFVRSKLLDGTSGCIYI 175
+P+S I+ +D L Q + L G DE+L + DG + I +
Sbjct: 134 KPISSITTEDERDSYLEDARNQSGSNTDESELVGFAKTKDELLKLIDVNTNDGPAKVICV 193
Query: 176 SGVPGTGKTATVSSALQILKKEANLPEFQLVEVNGMRLAEPRQAFVQIYKQLTG 229
G+ G GKT A + + N + V+ + + ++ Q+ +QL G
Sbjct: 194 VGMGGLGKTTLARKAYENKEHMKNFSCCAWITVS--QSFDRKEILKQMIRQLLG 245
>03_05_0051 - 20288456-20291728
Length = 1090
Score = 29.5 bits (63), Expect = 6.5
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 149 GRESQMDEILSFVRSKLLDGTS--GCIYISGVPGTGKTA 185
GRES++ +++S + S +DG + I GV G GKTA
Sbjct: 184 GRESEIQQLVSTLLSSQVDGDNPVSVASIVGVGGVGKTA 222
>02_05_0693 -
30977323-30977421,30977783-30977843,30978874-30978996,
30979258-30979340,30979847-30979924,30980375-30980506,
30980685-30980728,30980966-30981090,30981468-30981769,
30981877-30981994,30982444-30982574,30983082-30983276,
30983362-30983646
Length = 591
Score = 29.5 bits (63), Expect = 6.5
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 155 DEILSFVRSKLLDGTSGCIYISGVPGTGKTATVSSALQILKKEANLP 201
DEI R K + G PGTGKT S+ +++ K+A +P
Sbjct: 361 DEIARATRCKFETNRPRAVLFEGPPGTGKT----SSARVIAKQAGVP 403
>11_06_0553 -
24920428-24921057,24921149-24921276,24921372-24921409,
24921522-24921734,24921906-24921998,24922089-24922276,
24922396-24922502,24922614-24922775,24922870-24922953,
24923060-24923168,24923340-24923468,24923504-24923556,
24923654-24923759,24924082-24924189
Length = 715
Score = 29.1 bits (62), Expect = 8.6
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 150 RESQMDEILSFVRSKLLDGTSGCIYISGVPGTGKTATV 187
+E E+ +RS L DG + CI G GTGKT T+
Sbjct: 250 QEDVFQEVKPILRSAL-DGHNVCILAYGQTGTGKTYTM 286
>06_01_0608 - 4399252-4399894,4401640-4402427
Length = 476
Score = 29.1 bits (62), Expect = 8.6
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 147 LPGRESQMDEILSFVRSKLLDGTSGCIYISGVPGTGKTATVSSALQILKKEANLPEFQLV 206
LP R + IL +R + G + + ++G PGTGKTA + L E
Sbjct: 47 LPARRAA-GLILQLIRQGKIAGRA--VLLAGQPGTGKTALAMGIAKSLGAETPFASVAAS 103
Query: 207 EVNGMRLAEPRQAFVQIYKQLTG 229
E+ + L++ +A Q +++ G
Sbjct: 104 ELFSLDLSK-TEALTQAFRRSIG 125
>04_04_1035 +
30283456-30283536,30284823-30285359,30285508-30286512,
30286718-30287042,30287563-30287818,30287901-30288117,
30288743-30289095,30289330-30289833,30291267-30292467,
30292614-30292970,30293258-30293495,30294083-30295125,
30295234-30296649,30296731-30296855,30297036-30297314,
30297352-30297382,30298957-30299022,30299447-30299689,
30299848-30299898,30299980-30300071,30300182-30300249,
30300515-30300600,30300720-30300824,30300994-30301127,
30302403-30302436,30302620-30302892,30303019-30303288,
30303384-30303974,30304065-30304214
Length = 3376
Score = 29.1 bits (62), Expect = 8.6
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 151 ESQMDEILSFVRSKLLDGTSGCIYISGVPGTGKTATVSSALQIL 194
+SQ+D I S + + + I G PGTGKT TVS+ L L
Sbjct: 225 QSQVDAIESVISAVQCRHLNLMKLIWGPPGTGKTKTVSALLWAL 268
>04_01_0261 +
3516461-3516629,3517729-3517823,3518724-3518834,
3519179-3519213,3519864-3519954,3520124-3520196,
3521127-3521257,3524325-3524720
Length = 366
Score = 29.1 bits (62), Expect = 8.6
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 74 RSSKKVSQTNLEEVLLMELQENSDDELPTLIIKQHTLTTPKRKQPLSKI-SDDTPKKILT 132
R +K++S+ N E LME Q ELP L K LT KR + L+K ++D K
Sbjct: 277 RQNKELSKQNKE---LME-QSKELMELPALRKKHEELT--KRYESLTKKRNEDLAKLRKE 330
Query: 133 FNDEQKDYVNENKALPGRESQMDE 156
D+Q D+ E + L Q+ E
Sbjct: 331 KEDQQVDFKKEKEDLEREIRQLKE 354
>03_02_0057 - 5312812-5312852,5313061-5313201,5314159-5314345
Length = 122
Score = 29.1 bits (62), Expect = 8.6
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 348 ARKVASVSGDARRALTLCSRALELAGPEGAGLKEVQQALAEAASSAPVR 396
A A+ + RRA + AL GP G G+ E QQ LA S +PV+
Sbjct: 17 APSAAAAAATGRRAPSRVVAALGGGGPAGRGM-EQQQQLAGDGSRSPVK 64
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.128 0.353
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,997,933
Number of Sequences: 37544
Number of extensions: 499747
Number of successful extensions: 1287
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1261
Number of HSP's gapped (non-prelim): 47
length of query: 500
length of database: 14,793,348
effective HSP length: 85
effective length of query: 415
effective length of database: 11,602,108
effective search space: 4814874820
effective search space used: 4814874820
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 62 (29.1 bits)
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