GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002754-TA|BGIBMGA002754-PA|IPR001998|Xylose isomerase,
IPR003959|AAA ATPase, central region, IPR003593|AAA ATPase
         (500 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439060-11|CAD27762.1| 1881|Anopheles gambiae putative cell-adh...    25   3.6  
AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.            25   3.6  
AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein p...    25   6.2  

>AJ439060-11|CAD27762.1| 1881|Anopheles gambiae putative
           cell-adhesion protein protein.
          Length = 1881

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 144 NKALPGRESQMDEILSFVRSKLLDGTSGCIYISGVPGTGKTATVSSALQILKKEANLPEF 203
           N+A  G   +   +L + R + L  T   +  S V   G+T+T    + +L +  N PEF
Sbjct: 458 NEATFGLRVKDPSMLDYERVRELSLT---VVASEVESAGRTSTAQIRVVVLDQNDNFPEF 514


>AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.
          Length = 1356

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 8/94 (8%)

Query: 11  PQTPSSLLKKLSRVSISEQRDWSVTKNEGSKLLLKRAILAEXXXXXXXXXXXXXXXXXXX 70
           PQ  ++ L KL R+ +S+   WSV        +   A L+                    
Sbjct: 144 PQVFTNELSKLQRLDLSQNNMWSVPDG----FICPLARLSYLNLTQNRLRDLSVFHFSAS 199

Query: 71  XXXRSSKKVSQTNLEEVLLMELQENSDDELPTLI 104
              R SKK   +    ++ ++L +N+ D LP  I
Sbjct: 200 LSTRLSKKCGSS----IVTLDLPQNTIDNLPPAI 229


>AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein
            protein.
          Length = 3325

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 10/30 (33%), Positives = 20/30 (66%)

Query: 116  KQPLSKISDDTPKKILTFNDEQKDYVNENK 145
            +Q  + +SD   +K L   DE++D+++E+K
Sbjct: 1199 EQMAATLSDPEKQKQLLQQDEEEDFLDESK 1228


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.314    0.128    0.353 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 435,633
Number of Sequences: 2123
Number of extensions: 15591
Number of successful extensions: 19
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 3
length of query: 500
length of database: 516,269
effective HSP length: 67
effective length of query: 433
effective length of database: 374,028
effective search space: 161954124
effective search space used: 161954124
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 50 (24.2 bits)