GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002754-TA|BGIBMGA002754-PA|IPR001998|Xylose isomerase,
IPR003959|AAA ATPase, central region, IPR003593|AAA ATPase
         (500 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031633-9|CAA21023.1|  636|Caenorhabditis elegans Hypothetical ...   180   3e-45
U80437-18|AAB37629.1|  518|Caenorhabditis elegans Cell division ...   103   3e-22
Z75952-2|CAB00095.1| 1100|Caenorhabditis elegans Hypothetical pr...    30   4.4  
Z75532-2|CAA99812.1|  839|Caenorhabditis elegans Hypothetical pr...    30   4.4  
U52515-1|AAA97925.1| 1036|Caenorhabditis elegans hum-1 protein.        30   4.4  
U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical pr...    30   4.4  
AC024756-9|AAK29883.4|  430|Caenorhabditis elegans Hypothetical ...    30   4.4  
U88170-1|AAB42248.2|  438|Caenorhabditis elegans Hypothetical pr...    29   5.8  
U41992-4|AAL02506.2|  876|Caenorhabditis elegans Hypothetical pr...    29   7.6  

>AL031633-9|CAA21023.1|  636|Caenorhabditis elegans Hypothetical
           protein Y39A1A.12 protein.
          Length = 636

 Score =  180 bits (437), Expect = 3e-45
 Identities = 108/267 (40%), Positives = 153/267 (57%), Gaps = 19/267 (7%)

Query: 147 LPGRESQMDEILSFVRSKLLD---GTSGCIYISGVPGTGKTATVSSALQILKKEANLPEF 203
           LP R+ +  EI  F+R +++D   G S  +YISGVPGTGKTATV + +  +KK     +F
Sbjct: 267 LPCRDIESREIEKFIR-EVIDPKRGESSAMYISGVPGTGKTATVRAVVNSMKKSKKCQKF 325

Query: 204 QLVEVNGMRLAEPRQAFVQIY----------KQLTGKSVVWEQACSLLEKRFTNMGPRRT 253
             VEVN M     +  FV+IY          K+     +    A   L   F    P+R 
Sbjct: 326 VYVEVNAMIFK--KTVFVEIYNGIQEEYNISKKPQRAKITATAARQELNSIFKREDPKRP 383

Query: 254 PTVLLVDELDALCTRRQDVLYSIMEWASHNTALLTVLAVANTMDLPERALASRVASRLGL 313
           P V+L+DELD+LC R+QDVLY I EW +   + +T++ +ANT+D PER L  R ASRL  
Sbjct: 384 PIVVLIDELDSLCNRKQDVLYDIFEWTALPQSKVTIIGIANTLDFPERMLCQRNASRLDK 443

Query: 314 TRLTFPPYTHTQLQKIVATRLAGAN-VTPDAVQLIARKVASVSGDARRALTLCSRALELA 372
            RL F PY H Q+++IV  RL G+N + P AV+L+A+KVA  +GD R+AL    RA+ +A
Sbjct: 444 RRLVFQPYQHEQIEEIVRARLQGSNLIDPKAVELVAKKVAMNTGDLRQALDFLCRAIRVA 503

Query: 373 GPEGAGLKEVQQALAEAASSAPVRAIK 399
               +   E+   +  AA +A +  +K
Sbjct: 504 VERKSEKLELSHVI--AAQNAVLEPLK 528


>U80437-18|AAB37629.1|  518|Caenorhabditis elegans Cell division
           cycle related protein6 protein.
          Length = 518

 Score =  103 bits (247), Expect = 3e-22
 Identities = 77/253 (30%), Positives = 122/253 (48%), Gaps = 22/253 (8%)

Query: 112 TPKRKQPLSKISDDTPKKILTFNDEQKDYVNENKALPGRESQMDEILSFVRSKLLDGTSG 171
           TP++K      S+   ++I++ + E         AL GR  + D +  ++       TS 
Sbjct: 145 TPEKKSRKESSSESDSEEIISTSSEG--------ALKGRREEFDSLKLWIMKSKETNTSL 196

Query: 172 CIYISGVPGTGKTATVSSALQILKKEANLPEFQLVEVNGMRLAEPRQAFVQIYKQLTGKS 231
            IY+SG PGTGKTAT    L+ L K       +   VN          F  I++ L    
Sbjct: 197 SIYVSGQPGTGKTATTMRVLKSLGKSV-----RSCIVNCASTNTKSALFKTIFESLDLDG 251

Query: 232 VVWEQACSLLEKRFTNMGPRRTPTVLLVDELDALCTRRQDVLYSIMEWASHNTALLTVLA 291
              E+      K+F      +TP VL++DE+D L  R+   LY+  +W    +  + +L 
Sbjct: 252 KPNEEIFEKHVKQF------KTPLVLVLDEIDHLANRKNAALYAAFQWPETLSRKIIILG 305

Query: 292 VANTMDLPERALASRVASRLGLTRLTFPPYTHTQLQKIVATRLAGANVTPD--AVQLIAR 349
           +AN++DL ER L   + ++    RL F PYT   + +I+  ++     + D  A++L AR
Sbjct: 306 IANSIDLTERLLPKLMLAK-PPKRLVFEPYTKDDIVEILNDKMKNEETSIDAKAIELTAR 364

Query: 350 KVASVSGDARRAL 362
           KVA++SGD R AL
Sbjct: 365 KVAAMSGDLRTAL 377


>Z75952-2|CAB00095.1| 1100|Caenorhabditis elegans Hypothetical
           protein F29D10.4 protein.
          Length = 1100

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 162 RSKLLDGTSGCIYISGVPGTGKTATVSSALQILKK 196
           R+ L+D  S C+ ISG  G GKT      +  + +
Sbjct: 92  RNMLIDNESQCVIISGESGAGKTVNAKFIMNYISR 126


>Z75532-2|CAA99812.1|  839|Caenorhabditis elegans Hypothetical
           protein C54G10.2 protein.
          Length = 839

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 8/72 (11%)

Query: 92  LQENSDDELPTLIIKQHTLTTPKRKQPLSKISDDTPKKILTFNDEQKDYVNENKALPGRE 151
           +  +SDD++P    KQ    TP +K+        T   +LT +DE+++   + K  P R 
Sbjct: 9   VSSDSDDDMPFTQEKQKKAATPAKKR--------TKPVVLTDDDEEEENAPQKKTAPKRS 60

Query: 152 SQMDEILSFVRS 163
            + ++  S + S
Sbjct: 61  RKQEKEESDITS 72


>U52515-1|AAA97925.1| 1036|Caenorhabditis elegans hum-1 protein.
          Length = 1036

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 162 RSKLLDGTSGCIYISGVPGTGKTATVSSALQILKK 196
           R+ L+D  S C+ ISG  G GKT      +  + +
Sbjct: 30  RNMLIDNESQCVIISGESGAGKTVNAKFIMNYISR 64


>U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical
           protein K10D2.3 protein.
          Length = 1425

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 5/72 (6%)

Query: 84  LEEVLLMELQENSDDELPTLIIKQHTLTTPKRKQPLSKISDDTPKKILTFNDEQKDYVNE 143
           LEE L +  Q+N D     + +    ++T  + +P++K+S++ P KI      Q D +  
Sbjct: 823 LEETLKISSQKNID-----VAVTSMPVSTEIKPEPITKLSNEAPVKIKNVAQPQCDLIEA 877

Query: 144 NKALPGRESQMD 155
            +     ES M+
Sbjct: 878 PQESLMNESMME 889


>AC024756-9|AAK29883.4|  430|Caenorhabditis elegans Hypothetical
           protein Y34D9A.10 protein.
          Length = 430

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 11/38 (28%), Positives = 19/38 (50%)

Query: 234 WEQACSLLEKRFTNMGPRRTPTVLLVDELDALCTRRQD 271
           W      L K    +     P+++ +DE+D+LC+ R D
Sbjct: 192 WLGESEKLVKNLFALAREHKPSIIFIDEIDSLCSARSD 229


>U88170-1|AAB42248.2|  438|Caenorhabditis elegans Hypothetical
           protein C10G11.8 protein.
          Length = 438

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 2/46 (4%)

Query: 228 TGKSVVWEQAC--SLLEKRFTNMGPRRTPTVLLVDELDALCTRRQD 271
           TG  +V +Q+   + L ++   M   + P+++ +DE+DA+ T+R D
Sbjct: 249 TGSDLVQKQSGEGARLVRQIFQMAKEQAPSIVFIDEIDAVGTKRFD 294


>U41992-4|AAL02506.2|  876|Caenorhabditis elegans Hypothetical
           protein F32E10.3 protein.
          Length = 876

 Score = 29.1 bits (62), Expect = 7.6
 Identities = 12/37 (32%), Positives = 23/37 (62%)

Query: 77  KKVSQTNLEEVLLMELQENSDDELPTLIIKQHTLTTP 113
           K+V    +E++  +E +++++DE  T+  KQ T  TP
Sbjct: 718 KEVPVDEIEKIAKLEAKQHTEDEKVTVETKQETAVTP 754


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.314    0.128    0.353 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,866,428
Number of Sequences: 27539
Number of extensions: 415204
Number of successful extensions: 1017
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1001
Number of HSP's gapped (non-prelim): 13
length of query: 500
length of database: 12,573,161
effective HSP length: 84
effective length of query: 416
effective length of database: 10,259,885
effective search space: 4268112160
effective search space used: 4268112160
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 62 (29.1 bits)