GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002754-TA|BGIBMGA002754-PA|IPR001998|Xylose isomerase,
IPR003959|AAA ATPase, central region, IPR003593|AAA ATPase
         (500 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   5.9  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   5.9  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    23   7.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   7.8  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 365 CSRALELAGPEGAGLKEVQQ 384
           C R++ L  PE  GLK +Q+
Sbjct: 335 CLRSIILFNPEVRGLKSIQE 354


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 365 CSRALELAGPEGAGLKEVQQ 384
           C R++ L  PE  GLK +Q+
Sbjct: 335 CLRSIILFNPEVRGLKSIQE 354


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 180 GTGKTATVSSALQILKKEAN 199
           GTGKTAT   A ++ +K  N
Sbjct: 170 GTGKTATPQQAQEVHEKLRN 189


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 12/30 (40%), Positives = 14/30 (46%)

Query: 470 LLLLEPKPTEPRLLLNVSPDDVHYATRQIT 499
           LLLL   P +PR     S  DVH     +T
Sbjct: 886 LLLLHLTPLQPRFYSISSSPDVHQGQIHLT 915


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.128    0.353 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,420
Number of Sequences: 429
Number of extensions: 4736
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 4
length of query: 500
length of database: 140,377
effective HSP length: 61
effective length of query: 439
effective length of database: 114,208
effective search space: 50137312
effective search space used: 50137312
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 46 (22.6 bits)