GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002753-TA|BGIBMGA002753-PA|IPR000437|Prokaryotic
membrane lipoprotein lipid attachment site,
IPR001991|Sodium:dicarboxylate symporter
         (170 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    24   0.77 
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    24   0.77 
AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory recept...    23   1.3  
AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory recept...    23   1.3  
AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory recept...    23   1.3  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    23   1.3  
AM292351-1|CAL23163.2|  394|Tribolium castaneum gustatory recept...    20   9.5  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 23.8 bits (49), Expect = 0.77
 Identities = 13/52 (25%), Positives = 30/52 (57%), Gaps = 3/52 (5%)

Query: 52  FQFPGELFLRMLKSLIVPLLVSSIVSAIGSLDLSLSGKVGLRAIIYYMTTTV 103
           F+ P  + +R+L++LI+ L++ +I    G  DL+  G + +  +++   T +
Sbjct: 409 FKEPLLIKVRLLQTLIISLVIGAIY--FGQ-DLNQDGVMNINGVLFVFLTNM 457


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 23.8 bits (49), Expect = 0.77
 Identities = 13/52 (25%), Positives = 30/52 (57%), Gaps = 3/52 (5%)

Query: 52  FQFPGELFLRMLKSLIVPLLVSSIVSAIGSLDLSLSGKVGLRAIIYYMTTTV 103
           F+ P  + +R+L++LI+ L++ +I    G  DL+  G + +  +++   T +
Sbjct: 409 FKEPLLIKVRLLQTLIISLVIGAIY--FGQ-DLNQDGVMNINGVLFVFLTNM 457


>AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory receptor
           candidate 47 protein.
          Length = 387

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)

Query: 59  FLRMLKSLIVPLLVSSIV----SAIGSLDLSLSGKVGLRAIIYYMTTTVCAVMLG 109
           F R  K L+V   V  ++      IG +    +    L A ++Y+ TTV  V++G
Sbjct: 52  FFRDHKLLLVLFRVLGVMPIQRGEIGRITFGWTSIPMLYAYVFYVVTTVLVVLVG 106


>AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory receptor
           candidate 26 protein.
          Length = 387

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)

Query: 59  FLRMLKSLIVPLLVSSIV----SAIGSLDLSLSGKVGLRAIIYYMTTTVCAVMLG 109
           F R  K L+V   V  ++      IG +    +    L A ++Y+ TTV  V++G
Sbjct: 52  FFRDHKLLLVLFRVLGVMPIQRGEIGRITFGWTSIPMLYAYVFYVVTTVLVVLVG 106


>AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory receptor
           candidate 6 protein.
          Length = 387

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)

Query: 59  FLRMLKSLIVPLLVSSIV----SAIGSLDLSLSGKVGLRAIIYYMTTTVCAVMLG 109
           F R  K L+V   V  ++      IG +    +    L A ++Y+ TTV  V++G
Sbjct: 52  FFRDHKLLLVLFRVLGVMPIQRGEIGRITFGWTSIPMLYAYVFYVVTTVLVVLVG 106


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 7/63 (11%)

Query: 58  LFLRMLKSLIVPLLVSSIVSAIGSLDLSLSGK------VGL-RAIIYYMTTTVCAVMLGI 110
           L L  + + I  L +   +  IG+ D++++GK       GL  + + Y    +C++++ I
Sbjct: 350 LTLNSVPTEIYNLEIQRFIQQIGNSDIAITGKNFFSITRGLILSFVDYFVFLLCSILVNI 409

Query: 111 ALV 113
           A +
Sbjct: 410 AFI 412


>AM292351-1|CAL23163.2|  394|Tribolium castaneum gustatory receptor
           candidate 30 protein.
          Length = 394

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 6/20 (30%), Positives = 14/20 (70%)

Query: 70  LLVSSIVSAIGSLDLSLSGK 89
           L++   +  IG+L+++ +GK
Sbjct: 329 LIIQRFIHQIGTLEVAFTGK 348


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.324    0.138    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,881
Number of Sequences: 317
Number of extensions: 992
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 170
length of database: 114,650
effective HSP length: 53
effective length of query: 117
effective length of database: 97,849
effective search space: 11448333
effective search space used: 11448333
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 40 (20.2 bits)