GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002753-TA|BGIBMGA002753-PA|IPR000437|Prokaryotic
membrane lipoprotein lipid attachment site,
IPR001991|Sodium:dicarboxylate symporter
         (170 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    26   2.6  
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c...    26   3.4  
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe...    26   3.4  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    25   4.5  
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom...    25   6.0  

>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 19  LTILTVVGVAAGTLLGCGLRASGHQWSKRDVM 50
           ++ L  +G+  G  +GCG+      W  R V+
Sbjct: 407 VSALPYIGILVGVFIGCGINCLFEPWYFRQVI 438


>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 11/40 (27%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 84  LSLSGKVGLRAIIYYMTTTVCAVMLGIAL-VTTIKPGSNS 122
           L  S   G+RA +++++T +C   LG+ +   T+  G+++
Sbjct: 330 LDHSNHHGVRAGVFFISTGLCLAQLGVNIAANTVSAGNDT 369


>SPBC16H5.11c |skb1|rmt5|type II protein arginine
           N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 645

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 16  ENLLTILTVVGVAAGTLLGCGLRAS 40
           E+ +T + VVG   G L+ C LRA+
Sbjct: 342 ESSVTRIAVVGAGRGPLVDCALRAA 366


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 13/26 (50%), Positives = 17/26 (65%)

Query: 59  FLRMLKSLIVPLLVSSIVSAIGSLDL 84
           FL++L SL   L VSS  S + SL+L
Sbjct: 159 FLKLLMSLSAKLAVSSNSSTVSSLEL 184


>SPBC1703.13c |||inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 2/67 (2%)

Query: 62  MLKSLIVPLLVSSIVSAIGSLD--LSLSGKVGLRAIIYYMTTTVCAVMLGIALVTTIKPG 119
           M+K      +V ++ + IG      S + K+G+     YM   +CA++   A V   K  
Sbjct: 191 MMKFASFERIVEALYTYIGKPKNMYSKAEKIGISFAGGYMAGVLCAIISHPADVMVSKLN 250

Query: 120 SNSKGNE 126
           SN K  E
Sbjct: 251 SNKKAGE 257


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.138    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 548,493
Number of Sequences: 5004
Number of extensions: 18417
Number of successful extensions: 55
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 51
Number of HSP's gapped (non-prelim): 5
length of query: 170
length of database: 2,362,478
effective HSP length: 68
effective length of query: 102
effective length of database: 2,022,206
effective search space: 206265012
effective search space used: 206265012
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 51 (24.6 bits)