GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002753-TA|BGIBMGA002753-PA|IPR000437|Prokaryotic
membrane lipoprotein lipid attachment site,
IPR001991|Sodium:dicarboxylate symporter
         (170 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0143 + 28000038-28000211,28002217-28002230,28002713-280027...    33   0.16 
03_02_0156 - 5981080-5982189,5982227-5982247,5983308-5983337           31   0.49 
02_01_0410 + 2996779-2997888                                           31   0.49 
05_06_0166 + 26093618-26095381,26095820-26096039,26096345-260966...    29   2.6  
03_01_0065 + 529200-529438,529770-529929,530217-530299,530398-53...    29   2.6  
04_01_0568 - 7279478-7279590,7279749-7279988,7280078-7280141,728...    27   8.0  

>05_07_0143 +
           28000038-28000211,28002217-28002230,28002713-28002788,
           28003304-28003865,28004476-28004761,28004848-28005118,
           28005478-28005633,28005871-28006368,28006809-28007093
          Length = 773

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 2/67 (2%)

Query: 71  LVSSIVSAIGSLDLSLSGKVGLRAIIYYMTTTVCAVMLGIALVTTIKPG--SNSKGNEEL 128
           L+ S ++ +  LD SLS  +  +++  Y +         I++  T+KPG  SN++  + L
Sbjct: 470 LLGSNIAPLRDLDFSLSPLLAAQSMTKYNSAAPTTTGPAISMQETLKPGVFSNAQSTQNL 529

Query: 129 NTTKIVT 135
            +T I T
Sbjct: 530 PSTSIAT 536


>03_02_0156 - 5981080-5982189,5982227-5982247,5983308-5983337
          Length = 386

 Score = 31.1 bits (67), Expect = 0.49
 Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 5/100 (5%)

Query: 18  LLTILTVVGVAAGTLLGCGLRASGHQWSKRDVMYFQFPGELFLRMLKSLIVPLLVSSIVS 77
           LL   +V GVAAG  L   L +  ++W+   VM F +PG L      + +V +L+   + 
Sbjct: 50  LLQQASVYGVAAGYCLSASLLSIINKWA---VMKFPYPGALTALQYFTSVVGVLLCGQLK 106

Query: 78  AI--GSLDLSLSGKVGLRAIIYYMTTTVCAVMLGIALVTT 115
            I    L+L    K    A+++Y++    + +L  A V T
Sbjct: 107 LIEHDGLNLRTMWKFLPAAVMFYISIFTNSELLLHANVDT 146


>02_01_0410 + 2996779-2997888
          Length = 369

 Score = 31.1 bits (67), Expect = 0.49
 Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 5/100 (5%)

Query: 18  LLTILTVVGVAAGTLLGCGLRASGHQWSKRDVMYFQFPGELFLRMLKSLIVPLLVSSIVS 77
           LL   +V GVAAG  L   L +  ++W+   VM F +PG L      + +V +L+   + 
Sbjct: 33  LLQQTSVYGVAAGYCLSASLLSIINKWA---VMKFPYPGALTALQYFTSVVGVLLCGQLK 89

Query: 78  AI--GSLDLSLSGKVGLRAIIYYMTTTVCAVMLGIALVTT 115
            I    L+L    K    A+++Y++    + +L  A V T
Sbjct: 90  LIEHDGLNLRTMWKFLPAAVMFYISIFTNSELLLHANVDT 129


>05_06_0166 +
           26093618-26095381,26095820-26096039,26096345-26096674,
           26097481-26098029,26098366-26098426,26099737-26099824,
           26100240-26100299
          Length = 1023

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 16/52 (30%), Positives = 24/52 (46%)

Query: 41  GHQWSKRDVMYFQFPGELFLRMLKSLIVPLLVSSIVSAIGSLDLSLSGKVGL 92
           GH    R   +F     L      S  +PLLV  + + IG +  S SG++G+
Sbjct: 272 GHMDGSRSHPHFPVTARLTSTSSDSDSLPLLVDGVRNGIGGIARSFSGELGI 323


>03_01_0065 +
           529200-529438,529770-529929,530217-530299,530398-530488,
           530585-530680,531107-531220,531325-531408,531493-531648,
           531755-531829,532172-532278,532361-532544,532970-533158,
           533372-533452,533794-533925,534302-534355,534484-534809,
           534925-535030,535491-535640,535763-535909
          Length = 857

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 4/79 (5%)

Query: 19  LTILTVVGVAAGTLLGCGLRASGHQWSKRDVMY--FQFPGELFLRMLKSLIVPLLVSSIV 76
           L + + + V + T    G  AS    + R V+   FQFP EL L+   + +    V SIV
Sbjct: 624 LDLASSLEVGSATAQASG-DASADDCNLRSVLTIAFQFPYELHLQDSVAAMARQYVRSIV 682

Query: 77  SAIGSLDLSLS-GKVGLRA 94
           SA+  + +++S  + GL A
Sbjct: 683 SAVQRVSMAISPSQTGLNA 701


>04_01_0568 - 7279478-7279590,7279749-7279988,7280078-7280141,
            7280242-7280547,7280643-7280857,7281395-7281689,
            7281906-7281983,7282070-7282705,7283016-7283102,
            7283945-7284265,7285503-7287599
          Length = 1483

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 33   LGCGLRASGHQWSKRDVMYFQFPGELFLRMLKSLIVPLLVSSIVSAIGS--LDLSLSGKV 90
            +   LR S H +   + + F+   EL   +L S+   L++S   + I    + +SLS  +
Sbjct: 1125 INSNLRMSFHNYGANEWLGFRL--ELIGTLLLSITAFLMISLPSNFIKKEFVGMSLSYGL 1182

Query: 91   GLRAIIYYMTTTVCAV 106
             L +++YY  +  C +
Sbjct: 1183 SLNSLVYYTISMTCMI 1198


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.324    0.138    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,525,346
Number of Sequences: 37544
Number of extensions: 117337
Number of successful extensions: 317
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 316
Number of HSP's gapped (non-prelim): 6
length of query: 170
length of database: 14,793,348
effective HSP length: 77
effective length of query: 93
effective length of database: 11,902,460
effective search space: 1106928780
effective search space used: 1106928780
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 57 (27.1 bits)