GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002753-TA|BGIBMGA002753-PA|IPR000437|Prokaryotic
membrane lipoprotein lipid attachment site,
IPR001991|Sodium:dicarboxylate symporter
         (170 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    89   2e-20
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.52 
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   2.8  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   2.8  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   3.7  

>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 89.0 bits (211), Expect = 2e-20
 Identities = 42/107 (39%), Positives = 67/107 (62%), Gaps = 2/107 (1%)

Query: 13  FIRENLLTILTVVGVAAGTLLGCGLRASGHQWSKRDVMYFQFPGELFLRMLKSLIVPLLV 72
           + R+N+L + T+  V  G +LG   R +    + + +    FPGEL +R+LK  I+PL+V
Sbjct: 59  WFRKNMLLVFTIAAVLVGLILGFLGRLANP--TPQSITLISFPGELLMRLLKMFILPLIV 116

Query: 73  SSIVSAIGSLDLSLSGKVGLRAIIYYMTTTVCAVMLGIALVTTIKPG 119
           SS++S +  LD   SG++G RA++YY  TT+ A ++GI +V  I PG
Sbjct: 117 SSLISGMAQLDPKGSGRMGYRALLYYTVTTILAAIVGIVMVLIIHPG 163


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.6 bits (51), Expect = 0.52
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 21   ILTVVGVAAGTLLGCGLRASGHQWSKRDVMYFQ 53
            +  ++ +    ++ C LR  GH   K DV+Y Q
Sbjct: 1592 VAAILVIIVAVIVICVLRGKGHGSDKDDVVYQQ 1624


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 9/35 (25%), Positives = 22/35 (62%), Gaps = 1/35 (2%)

Query: 35  CGLRASGHQWSKRDVMYFQFPGELFLRMLKSLIVP 69
           C LR + + W+  D+++    G+  ++++K+L +P
Sbjct: 174 CSLRMASYGWTTDDLVFLWKEGDP-VQVVKNLHLP 207


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 9/35 (25%), Positives = 22/35 (62%), Gaps = 1/35 (2%)

Query: 35  CGLRASGHQWSKRDVMYFQFPGELFLRMLKSLIVP 69
           C LR + + W+  D+++    G+  ++++K+L +P
Sbjct: 174 CSLRMASYGWTTDDLVFLWKEGDP-VQVVKNLHLP 207


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 2/71 (2%)

Query: 23  TVVGVAAGTLL-GCGLRASGHQWSKRDVM-YFQFPGELFLRMLKSLIVPLLVSSIVSAIG 80
           T + VA  TL  G   +A     ++  +M  F+ P  +FL+ + +   P+++ +     G
Sbjct: 660 TEIDVAIKTLKPGSADKARNDFLTEASIMGQFEHPNVIFLQGVVTKSNPVMIITEFMENG 719

Query: 81  SLDLSLSGKVG 91
           SLD  L    G
Sbjct: 720 SLDTFLRANDG 730


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.138    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,837
Number of Sequences: 429
Number of extensions: 1039
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 5
length of query: 170
length of database: 140,377
effective HSP length: 54
effective length of query: 116
effective length of database: 117,211
effective search space: 13596476
effective search space used: 13596476
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 41 (20.6 bits)