GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002751-TA|BGIBMGA002751-PA|IPR001611|Leucine-rich
repeat, IPR003591|Leucine-rich repeat, typical subtype
         (775 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    30   0.052

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 30.3 bits (65), Expect = 0.052
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 13  SNLIKLKVLDLHGNRIGKV--CGLSNLVELKVLNLAGNQIKGIGITDLQGL 61
           ++LI+L+ + L  NRI  +      NL  LK LNL GN+I  I     Q L
Sbjct: 113 ADLIQLEQIHLDDNRIESLERRAFMNLKSLKRLNLKGNKIATIAYETFQNL 163



 Score = 28.7 bits (61), Expect = 0.16
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 9   IEGLSNLIKLKVLDLHGNRIGKVCGLSN-LVELKVLNLAGNQIKGIGITDLQGLAS 63
           +E   N+  L+ L+L  N +  V  +++ L EL+ L+L GN I  +  T L G A+
Sbjct: 483 LEVAGNISSLRYLNLDYNDLSAVPIVTHSLTELRHLSLEGNPITTLSNTSLLGAAN 538



 Score = 26.2 bits (55), Expect = 0.85
 Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 3/79 (3%)

Query: 35  SNLVELKVLNLAGNQIKGIGITDLQGLASXXXXXXXXX--XXXXXQGFQNTPKLQKLYLG 92
           ++L++L+ ++L  N+I+ +       L S                + FQN P+L+ L L 
Sbjct: 113 ADLIQLEQIHLDDNRIESLERRAFMNLKSLKRLNLKGNKIATIAYETFQNLPELEDLDLA 172

Query: 93  NNDLQSVEDMSTLSEATSL 111
            N + S+ D +   +  SL
Sbjct: 173 YNSISSL-DFNIFDQVGSL 190



 Score = 25.0 bits (52), Expect = 2.0
 Identities = 31/111 (27%), Positives = 42/111 (37%), Gaps = 6/111 (5%)

Query: 11  GLSNLIKLKVLDLHGNRIGKVC-GLSNLVELKVLNLAGNQIKGIGIT-DLQG---LASXX 65
           GL  L  +KVLDL  N I  V       VEL ++ L     K +  T DL G        
Sbjct: 218 GLGGLQNIKVLDLSFNNITSVAKQFFRPVELSLMQLYLGHNKLLNATKDLFGNMPHLQVL 277

Query: 66  XXXXXXXXXXXXQGFQNTPKLQKLYLGNNDLQSV-EDMSTLSEATSLIDIS 115
                         F+NT KLQ L   +N +  +  D+        ++D S
Sbjct: 278 DLSHNSLYELDFDTFRNTKKLQWLDTSHNRISEIPNDLFRFLGNLRIVDFS 328


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.131    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,713
Number of Sequences: 317
Number of extensions: 5316
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 4
length of query: 775
length of database: 114,650
effective HSP length: 62
effective length of query: 713
effective length of database: 94,996
effective search space: 67732148
effective search space used: 67732148
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 47 (23.0 bits)