GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002751-TA|BGIBMGA002751-PA|IPR001611|Leucine-rich
repeat, IPR003591|Leucine-rich repeat, typical subtype
         (775 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    33   0.007
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    26   1.0  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 33.5 bits (73), Expect = 0.007
 Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 4/92 (4%)

Query: 14  NLIKLKVLDLHGNRIGKV--CGLSNLVELKVLNLAGNQIKGIGITDLQGL--ASXXXXXX 69
           +L  L++LDL  N I ++       L  L  L L+ N+++ +G     GL   +      
Sbjct: 357 DLFFLQILDLRNNSIDRIESNAFLPLYNLHTLELSDNKLRTVGAQLFNGLFVLNRLTLSG 416

Query: 70  XXXXXXXXQGFQNTPKLQKLYLGNNDLQSVED 101
                     F+N   L++L L  N+L SV D
Sbjct: 417 NAIASIDPLAFRNCSDLKELDLSGNELTSVPD 448



 Score = 30.3 bits (65), Expect = 0.062
 Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 6/111 (5%)

Query: 10  EGLSNLIKLKVLDLHGNRIGKVCGLS--NLVELKVLNLAGNQIKGIG---ITDLQGLASX 64
           + L +L  LK LDL  NRI      S  NL +L  L L GN I  +    + DL  L   
Sbjct: 448 DALRDLALLKTLDLGENRISNFYNGSFRNLDQLTGLRLIGNDIGNLSRGMLWDLPNL-QI 506

Query: 65  XXXXXXXXXXXXXQGFQNTPKLQKLYLGNNDLQSVEDMSTLSEATSLIDIS 115
                          F+   +L+ + L  N L  +  + T   +  L+++S
Sbjct: 507 LNLARNKVQHVERYAFERNMRLEAIRLDGNFLSDINGVFTSIASLLLLNLS 557



 Score = 23.8 bits (49), Expect = 5.4
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 625 GLKEINDELVTDDEIKSA-NRTYNGLSDLVLRALPDAPLQPL 665
           G K +    V    I+S  NRT+NGL++L +  L D  ++ L
Sbjct: 816 GRKNMRVLYVNGSGIESIQNRTFNGLNNLQILHLEDNRIREL 857


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 26.2 bits (55), Expect = 1.0
 Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 10/85 (11%)

Query: 615 EYSVYRLAHWGL--------KEINDELVTDDEIKS-ANRTYNGLSDLVLRALPDAPLQPL 665
           EY+     +WG         KE +D+ V   +  S AN  + G ++  +  L D  + PL
Sbjct: 321 EYAAVNYTYWGARAKKKSKKKESDDKKVISSKSGSKANSPFPGSTEADIIELQDLRMSPL 380

Query: 666 LSRLGRSG-HSNISAKAWLRAADPA 689
            S   RSG  S  S     R  DPA
Sbjct: 381 PSIRNRSGLVSGSSTPGTGREHDPA 405


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.131    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,939
Number of Sequences: 429
Number of extensions: 6626
Number of successful extensions: 13
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 7
length of query: 775
length of database: 140,377
effective HSP length: 63
effective length of query: 712
effective length of database: 113,350
effective search space: 80705200
effective search space used: 80705200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 47 (23.0 bits)