GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002750-TA|BGIBMGA002750-PA|IPR005475|Transketolase,
central region, IPR005476|Transketolase, C-terminal,
IPR009014|Transketolase, C-terminal-like
         (351 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    23   4.4  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        22   5.8  

>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 17/62 (27%), Positives = 22/62 (35%)

Query: 123 AGTVPVPIVFRGPNGAASGVAAQHSQCFGAWYSHCPGLKVLMPYSAEDAKGLLKAAIRDP 182
           A   P P V    + AA+  AA+     G  + H P L      +A     L     R P
Sbjct: 273 AERAPAPAVRAAGDAAAARGAARADGAGGPLHDHRPALAQQRRVAAVQVPQLAGGGRRGP 332

Query: 183 DP 184
            P
Sbjct: 333 GP 334


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/29 (31%), Positives = 16/29 (55%)

Query: 232 RGTDTALKAAEQLAGSKGIECEVVNLRTI 260
           R T  ++ A  +L   KG EC+ + ++ I
Sbjct: 148 RSTAPSVSAISRLLRGKGGECDEITIQAI 176


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.135    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,003
Number of Sequences: 317
Number of extensions: 2763
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 2
length of query: 351
length of database: 114,650
effective HSP length: 57
effective length of query: 294
effective length of database: 96,581
effective search space: 28394814
effective search space used: 28394814
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)