GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002750-TA|BGIBMGA002750-PA|IPR005475|Transketolase,
central region, IPR005476|Transketolase, C-terminal,
IPR009014|Transketolase, C-terminal-like
         (351 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.13c |pdb1||pyruvate dehydrogenase e1 component beta su...   407   e-115
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy...    29   0.99 
SPAPYUG7.05 |||delta-1-pyrroline-5-carboxylate reductase |Schizo...    27   4.0  
SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces pomb...    26   7.0  
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M...    26   7.0  

>SPBC30D10.13c |pdb1||pyruvate dehydrogenase e1 component beta
           subunit Pdb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 366

 Score =  407 bits (1003), Expect = e-115
 Identities = 195/317 (61%), Positives = 243/317 (76%)

Query: 12  TSKALASKPVTVRDALNQAIDEEMERDEKVFVLGEEVAQYDGAYKVTRGLWKKYGDKRVI 71
           +S +   K +TVRDALN A++EEM+RD++VF++GEEVAQY+GAYK++RGL  K+G KRVI
Sbjct: 29  SSSSNGVKEMTVRDALNSAMEEEMKRDDRVFLIGEEVAQYNGAYKISRGLLDKFGPKRVI 88

Query: 72  DTPITEXXXXXXXXXXXXXXLKPICEFMTFNFSMQAIDHIINSAAKTFYMSAGTVPVPIV 131
           DTPITE              L+PICEFMTFNFSMQAIDHI+NSAA+T YMS G    PIV
Sbjct: 89  DTPITEMGFTGLATGAAFAGLRPICEFMTFNFSMQAIDHIVNSAARTLYMSGGIQACPIV 148

Query: 132 FRGPNGAASGVAAQHSQCFGAWYSHCPGLKVLMPYSAEDAKGLLKAAIRDPDPVVMLEDE 191
           FRGPNG A+ VAAQHSQ F  WY   PGLKV+ PYSAEDA+GLLKAAIRDP+PVV+LE+E
Sbjct: 149 FRGPNGPAAAVAAQHSQHFAPWYGSIPGLKVVSPYSAEDARGLLKAAIRDPNPVVVLENE 208

Query: 192 IMYGIPFPMSDEAQSKDFVLPIGKAKVEREGRHITLVCAGRGTDTALKAAEQLAGSKGIE 251
           I+YG  FP+S EA S+DFVLP G AKVER G+ IT+V       TAL+AA++L    G+E
Sbjct: 209 ILYGKTFPISKEALSEDFVLPFGLAKVERPGKDITIVGESISVVTALEAADKLKADYGVE 268

Query: 252 CEVVNLRTIRPMDFDTIARSIAKTHHLITVEQGWPQSGIGAEICARVMESPSFFELDAPV 311
            EV+NLR+IRP+D +TIA S+ KT+ ++TV+Q + Q GIG+EI A++MES +F  LDAPV
Sbjct: 269 AEVINLRSIRPLDINTIAASVKKTNRIVTVDQAYSQHGIGSEIAAQIMESDAFDYLDAPV 328

Query: 312 WRVCGADVPMPYARTLE 328
            RV  ADVPMPY+  +E
Sbjct: 329 ERVSMADVPMPYSHPVE 345


>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 667

 Score = 29.1 bits (62), Expect = 0.99
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 3/37 (8%)

Query: 274 KTHHLITVEQGWP---QSGIGAEICARVMESPSFFEL 307
           K H L+  ++GWP   +SG+G ++  +  +   FFE+
Sbjct: 222 KRHVLVQPQEGWPPLVRSGLGMKLTGQSQDLECFFEI 258


>SPAPYUG7.05 |||delta-1-pyrroline-5-carboxylate reductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 3/42 (7%)

Query: 187 MLEDEIMYGIPFPMSDEAQSKDFVLPIGKAKVEREGRHITLV 228
           M +  +M GIPFP + E  ++  V   G  ++  +G+H  ++
Sbjct: 201 MTDGGVMMGIPFPQAQELAAQTMV---GTGRMVLQGQHPAMI 239


>SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 380

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 14/52 (26%), Positives = 25/52 (48%)

Query: 2   LTRLSRRSFATSKALASKPVTVRDALNQAIDEEMERDEKVFVLGEEVAQYDG 53
           +T+++  + +  +A   K +  RDALN  + E  ER   +    E +  Y G
Sbjct: 324 ITQMTNETESFFQAKEEKMIETRDALNSELSEYHERIRALETQIESLKSYKG 375


>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 468

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 9/73 (12%)

Query: 6   SRRSFATSKALASKPVTVRDALN----QAIDEEMERDEKVFV-----LGEEVAQYDGAYK 56
           +R+SF    AL +   T+R+ LN    Q  D E ++    FV     L E   Q DG YK
Sbjct: 143 TRKSFVELNALQTSIDTIRNELNELRDQLNDSESKKLSDKFVEIRSELDEVRKQQDGYYK 202

Query: 57  VTRGLWKKYGDKR 69
             R L  +  D++
Sbjct: 203 DQRKLIAERDDEK 215


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.135    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,382,740
Number of Sequences: 5004
Number of extensions: 53045
Number of successful extensions: 108
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 106
Number of HSP's gapped (non-prelim): 5
length of query: 351
length of database: 2,362,478
effective HSP length: 73
effective length of query: 278
effective length of database: 1,997,186
effective search space: 555217708
effective search space used: 555217708
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)