Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002750-TA|BGIBMGA002750-PA|IPR005475|Transketolase,
central region, IPR005476|Transketolase, C-terminal,
IPR009014|Transketolase, C-terminal-like
(351 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0686 + 19457832-19457870,19458021-19458107,19459311-194593... 406 e-113
08_02_1399 + 26771106-26771171,26772004-26772111,26772218-267722... 390 e-108
12_02_1121 + 26233881-26234000,26234138-26234175,26235840-26236812 218 5e-57
03_05_0477 + 24707460-24707553,24707644-24707711,24707857-247079... 218 5e-57
07_01_0503 - 3751028-3751063,3751145-3751231,3751333-3751410,375... 121 8e-28
05_04_0284 - 19813179-19813340,19813464-19813748,19813850-198141... 52 7e-07
07_01_0646 + 4853546-4853623,4853732-4855357,4855467-4855751,485... 47 2e-05
06_01_0313 - 2250312-2250516,2250585-2250610,2250792-2251076,225... 44 2e-04
10_08_0440 + 17930970-17931297,17931682-17931905,17932439-179324... 30 3.2
11_01_0595 + 4732330-4732723,4732839-4732903,4733023-4733143,473... 29 7.4
06_03_1455 + 30264023-30264174,30265930-30266070,30266328-302664... 29 7.4
04_04_0764 - 27889257-27889394,27889472-27890128,27904516-279045... 28 9.7
>09_04_0686 +
19457832-19457870,19458021-19458107,19459311-19459391,
19459463-19459489,19459589-19459651,19459768-19459854,
19460290-19460415,19460827-19460960,19461037-19461109,
19461307-19461372,19461778-19461816,19461927-19462051,
19462131-19462245,19463109-19463141,19463525-19463593
Length = 387
Score = 406 bits (1000), Expect = e-113
Identities = 194/318 (61%), Positives = 241/318 (75%), Gaps = 2/318 (0%)
Query: 11 ATSKALASKPVTVRDALNQAIDEEMERDEKVFVLGEEVAQYDGAYKVTRGLWKKYGDKRV 70
A + + A+K +TVR+ALN A+DEEM D VF++GEEV +Y GAYK+++GL KYG +RV
Sbjct: 33 ARAYSAAAKEMTVREALNSALDEEMSADPSVFLMGEEVGEYQGAYKISKGLLDKYGPERV 92
Query: 71 IDTPITEXXXXXXXXXXXXXXLKPICEFMTFNFSMQAIDHIINSAAKTFYMSAGTVPVPI 130
+DTPITE L+P+ EFMTFNFSMQAIDHIINSAAK+ YMSAG + VPI
Sbjct: 93 LDTPITEAGFTGIAVGAAYQGLRPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQISVPI 152
Query: 131 VFRGPNGAASGVAAQHSQCFGAWYSHCPGLKVLMPYSAEDAKGLLKAAIRDPDPVVMLED 190
VFRGPNGAA+GV AQHSQC+ AWY+H PGLKVL+PYSAEDA+GLLKAAIRDPDPVV LE+
Sbjct: 153 VFRGPNGAAAGVGAQHSQCYAAWYAHVPGLKVLVPYSAEDARGLLKAAIRDPDPVVFLEN 212
Query: 191 EIMYGIPFPMSDEAQSKDFVLPIGKAKVEREGRHITLVCAGRGTDTALKAAEQLAGSKGI 250
E++YG FP+S E F LPIGKAK+EREG+ +T+ + AL+AA+ L+ +GI
Sbjct: 213 ELLYGESFPISAEVLDSSFALPIGKAKIEREGKDVTITAYSKMVGYALQAADILS-KEGI 271
Query: 251 ECEVVNLRTIRPMDFDTIARSIAKTHHLITVEQGWPQSGIGAEICARVMESPSFFELDAP 310
EV+NLR+IRP+D TI S+ KT+ L+T+E+ +PQ GIGAEIC V+E SF LDAP
Sbjct: 272 SAEVINLRSIRPLDRATINASVRKTNRLVTIEESFPQHGIGAEICMSVVEE-SFEYLDAP 330
Query: 311 VWRVCGADVPMPYARTLE 328
V R+ GADVPMPYA LE
Sbjct: 331 VERIAGADVPMPYAANLE 348
>08_02_1399 +
26771106-26771171,26772004-26772111,26772218-26772280,
26772382-26772468,26772931-26773056,26773418-26773551,
26773627-26773699,26773819-26773884,26774358-26774391,
26774904-26774953,26775067-26775191,26775278-26775392,
26775617-26775685
Length = 371
Score = 390 bits (959), Expect = e-108
Identities = 191/332 (57%), Positives = 238/332 (71%), Gaps = 15/332 (4%)
Query: 11 ATSKALASKPVTVRDALNQAIDEEMERDEKVFVLGEEVAQYDGAYKVTRGLWKKYGDKRV 70
A + + A+K +TVR+ALN A+DEEM D VF++GEEV +Y GAYK+++GL KYG RV
Sbjct: 13 ARTYSAAAKEMTVREALNSALDEEMSADPSVFLMGEEVGEYQGAYKISKGLLDKYGPDRV 72
Query: 71 IDTPITEXXXXXXXXXXXXXXLKPICEFMTFNFSMQAIDHIINSAAKTFYMSAGTVPVPI 130
+DTPITE L+P+ EFMTFNFSMQAIDHIINSAAK+ YMSAG + VPI
Sbjct: 73 LDTPITEAGFTGIGVGAAYQGLRPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQINVPI 132
Query: 131 VFRGPNGAASGVAAQHSQCFGAWYSHCPGLKVLMPYSAEDAKGLLKAAIRDPDPVVMLED 190
VFRGPNGAA+GV AQHSQC+ AWY+H PGLKVL PYSAEDA+GLLKAAIRDPDPVV LE+
Sbjct: 133 VFRGPNGAAAGVGAQHSQCYAAWYAHVPGLKVLTPYSAEDARGLLKAAIRDPDPVVFLEN 192
Query: 191 EIMYGIPFPMSDEAQSKDFVLPIGKAKVEREGRHITLVCAGRGTDTALK----------- 239
E++YG FP+S E F LPIGKAK+E+EG+ +T+ + AL+
Sbjct: 193 ELLYGESFPVSAEVLDSSFCLPIGKAKIEQEGKDVTITAFSKMVGYALQDVREPQMKEKD 252
Query: 240 ---AAEQLAGSKGIECEVVNLRTIRPMDFDTIARSIAKTHHLITVEQGWPQSGIGAEICA 296
A ++ +GI EV+NLR+IRP+D TI S+ KT+ L+T+E+G+PQ G+GAEIC
Sbjct: 253 VKFQAAEILSKEGISAEVINLRSIRPLDRATINASVRKTNRLVTLEEGFPQHGVGAEICM 312
Query: 297 RVMESPSFFELDAPVWRVCGADVPMPYARTLE 328
V+E SF LDAPV R+ GADVPMPYA LE
Sbjct: 313 SVVED-SFEYLDAPVERIAGADVPMPYAANLE 343
>12_02_1121 + 26233881-26234000,26234138-26234175,26235840-26236812
Length = 376
Score = 218 bits (533), Expect = 5e-57
Identities = 120/328 (36%), Positives = 189/328 (57%), Gaps = 12/328 (3%)
Query: 6 SRRSFATSKALASKP----VTVRDALNQAIDEEMERDEKVFVLGEEVAQYDGAYKVTRGL 61
+RRS + SK V + +AL +A+ EEM+ D V V GE+V Y G+YKVT+GL
Sbjct: 37 ARRSASADATAESKSGGHEVLLFEALREALIEEMKEDPTVCVFGEDVGHYGGSYKVTKGL 96
Query: 62 WKKYGDKRVIDTPITEXXXXXXXXXXXXXXLKPICEFMTFNFSMQAIDHIINSAAKTFYM 121
+ +GD RV+DTPI E L+PI E M F + A + I N+ Y
Sbjct: 97 AEMFGDLRVLDTPIAENSFAGMGVGAAMKGLRPIVEGMNMGFLLLAYNQISNNCGMLHYT 156
Query: 122 SAGTVPVPIVFRGPNGAASGVAAQHSQCFGAWYSHCPGLKVLMPYSAEDAKGLLKAAIRD 181
S G +PIV RGP G + A+HSQ +++ PGL+++ + +AKGL+KAAIR
Sbjct: 157 SGGQFKIPIVIRGPGGVGRQLGAEHSQRLESYFQSIPGLQMVACSTPYNAKGLMKAAIRS 216
Query: 182 PDPVVMLEDEIMYGIPFPMSDEAQSKDFVLPIGKAKVEREGRHITLVCAGRGTDTALKAA 241
+PVV+ E ++Y + + DE +++ + +A++ R G H+T++ R ++AA
Sbjct: 217 ENPVVLFEHVLLYNLKEKIPDE----EYICCLEEAEMVRPGEHVTILTYSRMRYHVMQAA 272
Query: 242 EQLAGSKGIECEVVNLRTIRPMDFDTIARSIAKTHHLITVEQGWPQSGIGAEICARVMES 301
+ L +KG + EV+++R+++P D TI SI KTH ++ VE+ GIGA + + +++
Sbjct: 273 KTLV-NKGYDPEVIDIRSLKPFDLHTIGNSIKKTHRVLIVEECMRTGGIGASLRSAIID- 330
Query: 302 PSFFE-LDAPVWRVCGADVPMPYARTLE 328
+F++ LDAP+ + DVP PYA TLE
Sbjct: 331 -NFWDYLDAPIMCLSSQDVPTPYAATLE 357
>03_05_0477 +
24707460-24707553,24707644-24707711,24707857-24707903,
24709188-24710160
Length = 393
Score = 218 bits (533), Expect = 5e-57
Identities = 120/324 (37%), Positives = 190/324 (58%), Gaps = 9/324 (2%)
Query: 6 SRRSFATSKALASKPVTVRDALNQAIDEEMERDEKVFVLGEEVAQYDGAYKVTRGLWKKY 65
S S A+SK+ + V + +AL +A+ EEM+ D V V GE+V Y G+YKVT+GL + +
Sbjct: 59 SPASAASSKSDGHE-VLLFEALREALIEEMKEDPTVCVFGEDVGHYGGSYKVTKGLAEMF 117
Query: 66 GDKRVIDTPITEXXXXXXXXXXXXXXLKPICEFMTFNFSMQAIDHIINSAAKTFYMSAGT 125
GD RV+DTPI E L+P+ E M F + A + I N+ Y S G
Sbjct: 118 GDLRVLDTPIAENSFTGMGVGAAMKGLRPVVEGMNMGFLLLAYNQISNNCGMLHYTSGGQ 177
Query: 126 VPVPIVFRGPNGAASGVAAQHSQCFGAWYSHCPGLKVLMPYSAEDAKGLLKAAIRDPDPV 185
+PIV RGP G + A+HSQ +++ PGL+++ + +AKGL+KAAIR +PV
Sbjct: 178 FKIPIVIRGPGGVGRQLGAEHSQRLESYFQSIPGLQMVACSTPYNAKGLMKAAIRSENPV 237
Query: 186 VMLEDEIMYGIPFPMSDEAQSKDFVLPIGKAKVEREGRHITLVCAGRGTDTALKAAEQLA 245
V+ E ++Y + + DE ++VL + +A++ R G H+T++ R ++AA+ L
Sbjct: 238 VLFEHVLLYNLKEKIPDE----EYVLCLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLV 293
Query: 246 GSKGIECEVVNLRTIRPMDFDTIARSIAKTHHLITVEQGWPQSGIGAEICARVMESPSFF 305
+KG + EV+++R+++P D TI SI KTH ++ VE+ GIGA + + +++ +F+
Sbjct: 294 -NKGYDPEVIDIRSLKPFDLHTIGNSIKKTHRVLIVEECMRTGGIGASLRSAIID--NFW 350
Query: 306 E-LDAPVWRVCGADVPMPYARTLE 328
+ LDAP+ + DVP PYA LE
Sbjct: 351 DYLDAPIMCLSSQDVPTPYAAPLE 374
>07_01_0503 -
3751028-3751063,3751145-3751231,3751333-3751410,
3751488-3751583,3752124-3752210,3752289-3752357,
3752511-3752600,3752601-3752720,3752907-3753004,
3753084-3753193,3753463-3753533,3753679-3753714,
3753862-3753973,3754495-3754700
Length = 431
Score = 121 bits (292), Expect = 8e-28
Identities = 75/201 (37%), Positives = 113/201 (56%), Gaps = 12/201 (5%)
Query: 127 PVPIVFRGPNGAASGVAAQHSQCFGAWYSHCPGLK----VLMPYSAEDAKGLLKAAIRDP 182
P+ + GP + G+ + + W C +K V++P S +AKGLL A+IRDP
Sbjct: 214 PLLDLISGPT-SLFGLGSSNGLHRNLWLFSCKLMKDKFQVIIPRSPREAKGLLLASIRDP 272
Query: 183 DPVVMLEDEIMYGIPFPMSDEAQSKDFVLPIGKAKVEREGRHITLVCAGRGTDTA-LKAA 241
+PVV E + +Y + +E +D++LP+ +A+V R+G ITL+ G G A L+ A
Sbjct: 273 NPVVFFEPKWLYRLAV---EEVPEEDYMLPLSEAEVIRKGSDITLI--GWGAQLAVLEEA 327
Query: 242 EQLAGSKGIECEVVNLRTIRPMDFDTIARSIAKTHHLITVEQGWPQSGIGAEICARVMES 301
+ A GI CE+++LRT+ P D +T+ S++KT L+ + G GAEI A + E
Sbjct: 328 CEDAAKDGISCELIDLRTLIPWDKETVEASVSKTGKLLVSHEAPITGGFGAEIAASITER 387
Query: 302 PSFFELDAPVWRVCGADVPMP 322
F L+APV RVCG D P P
Sbjct: 388 -CFQRLEAPVARVCGLDTPFP 407
Score = 57.6 bits (133), Expect = 1e-08
Identities = 46/167 (27%), Positives = 68/167 (40%), Gaps = 23/167 (13%)
Query: 17 ASKPVTVRDALNQAIDEEMERDEKVFVLGEEVAQYDGAYKVTRGLWKKYGDKRVIDTPIT 76
A K V + A+NQA+ ++ D + +V GE+V + G ++ T GL ++G RV +TP+
Sbjct: 46 AGKEVNLFTAINQALHIALDTDPRSYVFGEDVG-FGGVFRCTTGLADRFGRNRVFNTPLC 104
Query: 77 EXXXXXXXXXXXXXXLKPICEFMTFNFSMQAID---------------------HIINSA 115
E + I E ++ A D I+N A
Sbjct: 105 EQGIAGFAVGLAAMGNRAIAEIQFADYIFPAFDQACLRLDQCFVPTYLYIQLLVQIVNEA 164
Query: 116 AKTFYMSAGTVPV-PIVFRGPNGAASGVAAQHSQCFGAWYSHCPGLK 161
AK Y S + R P GA HSQ A++ H PGLK
Sbjct: 165 AKFRYRSGNEFNCGGLTIRSPYGAVGHGGHYHSQSPEAFFCHVPGLK 211
>05_04_0284 -
19813179-19813340,19813464-19813748,19813850-19814131,
19814224-19814531,19814654-19814927,19815807-19816175,
19816372-19816434,19817495-19817789,19817818-19818008,
19818123-19818428,19818516-19818638
Length = 885
Score = 52.0 bits (119), Expect = 7e-07
Identities = 68/290 (23%), Positives = 108/290 (37%), Gaps = 26/290 (8%)
Query: 11 ATSKALAS--KPVTVRDALNQAIDEEMERDEKVFVLGEEVAQYDGAYKVTRGLWKKYGDK 68
AT K S K ++ + +A+ E E+D +V + + G R
Sbjct: 548 ATGKQFKSPAKTLSYTNYFAEALIAEAEQDNRVVAIHAAMGGGTGLNYFLRRF-----PN 602
Query: 69 RVIDTPITEXXXXXXXXXXXXXXLKPICEFMTFNFSMQAIDHIINSAAKTFYMSAGTVPV 128
R D I E LKP C + +F + D +++ + +PV
Sbjct: 603 RCFDVGIAEQHAVTFAAGLACEGLKPFCAIYS-SFLQRGYDQVVHD------VDLQKLPV 655
Query: 129 PIVFRGPNGAASGVAAQHSQCFGAWYSHC-PGLKVLMPYSAEDAKGLLK--AAIRDPDPV 185
G H F Y C P + V+ P + ++ AAI D
Sbjct: 656 RFAMDRA-GLVGADGPTHCGAFDVTYMACLPNMVVMAPSDEAELCHMVATAAAIDDRPSC 714
Query: 186 VMLEDEIMYGIPFPMSDEAQSKDFVLPIGKAKVEREGRHITLVCAGRGTDTALKAAEQLA 245
G+P P + K L +GK +V EG + L+ G L AA L
Sbjct: 715 FRYPRGNGIGVPLPPN----YKGVPLEVGKGRVLLEGERVALLGYGSAVQYCLAAAS-LV 769
Query: 246 GSKGIECEVVNLRTIRPMDFDTIARSIAKTHH-LITVEQGWPQSGIGAEI 294
G++ V + R +P+D T+ R +A +H L+TVE+G G G+ +
Sbjct: 770 ERHGLKVTVADARFCKPLD-QTLIRRLASSHEVLLTVEEG-SIGGFGSHV 817
>07_01_0646 +
4853546-4853623,4853732-4855357,4855467-4855751,
4856131-4856277
Length = 711
Score = 47.2 bits (107), Expect = 2e-05
Identities = 62/267 (23%), Positives = 95/267 (35%), Gaps = 18/267 (6%)
Query: 29 QAIDEEMERDEKVFVLGEEVAQYDGAYKVTRGLWKKYGDKRVIDTPITEXXXXXXXXXXX 88
+A+ E E D+KV +G A G + K +R D I E
Sbjct: 399 EALIREAEADDKV--VGIHAAMGGGT---GLNYFHKRFPERCFDVGIAEQHAVTFAAGLA 453
Query: 89 XXXLKPICEFMTFNFSMQAIDHIINSAAKTFYMSAGTVPVPIVFRGPNGAASGVAAQHSQ 148
LKP C + +F + D +++ + +PV G H
Sbjct: 454 AEGLKPFCAIYS-SFLQRGYDQVVHD------VDLQRLPVRFAMDRA-GLVGADGPTHCG 505
Query: 149 CFGAWYSHC-PGLKVLMPYSAEDAKGLLKAAIRDPDPVVMLEDEIMYGIPFPMSDEAQSK 207
F Y C P + V+ P + ++ A D GI + K
Sbjct: 506 AFDVAYMACLPNMVVMAPADEAELMHMVATAAAIDDRPSCFRFPRGNGIGAVLPPN--HK 563
Query: 208 DFVLPIGKAKVEREGRHITLVCAGRGTDTALKAAEQLAGSKGIECEVVNLRTIRPMDFDT 267
L +GK +V G + L+ G +KAAE L GI V + R +P+D
Sbjct: 564 GTPLEVGKGRVLVGGNRVALLGYGTMVQACMKAAEALK-EHGIYVTVADARFCKPLDTGL 622
Query: 268 IARSIAKTHHLITVEQGWPQSGIGAEI 294
I A+ L+TVE+G G G+ +
Sbjct: 623 IRELAAEHEVLVTVEEG-SIGGFGSHV 648
>06_01_0313 -
2250312-2250516,2250585-2250610,2250792-2251076,
2251289-2251567,2251817-2252121,2252581-2252860,
2253209-2253475
Length = 548
Score = 43.6 bits (98), Expect = 2e-04
Identities = 63/278 (22%), Positives = 104/278 (37%), Gaps = 27/278 (9%)
Query: 22 TVRDALNQAIDEEMERDEKVFVLGEEVAQYDGAYKVTRGLWKKYGDKRVIDTPITEXXXX 81
T D +++ E E D+ + V+ + G + + ++ D R D I E
Sbjct: 202 TYNDCFVESLIAEAENDKHIVVVHGGM----GIDRSIQLFQSRFPD-RFFDLGIAEQHAV 256
Query: 82 XXXXXXXXXXLKPICEFMTFNFSMQAIDHIINSAAKTFYMSAGTVPVPIVFRGPNGAASG 141
LKP C + F +A D I+ + +PV G
Sbjct: 257 TFSAGLACGGLKPFC-IIPSTFLQRAYDQIVED------VDMQKIPVRFAITSA-GLVGS 308
Query: 142 VAAQHSQCFGAWYSHC-PGLKVLMPYSAEDAKGLLKAAIRDPDPVVMLEDE-IMYGIP-- 197
+S F + C P + V+ P + ++ ++ A M+ED I + P
Sbjct: 309 EGPTNSGPFDITFMSCLPNMIVMSPSNEDELIDMVATA-------AMVEDRPICFRYPKG 361
Query: 198 -FPMSDEAQSKDFVLPIGKAKVEREGRHITLVCAGRGTDTALKAAEQLAGSKGIECEVVN 256
+ + L IGK ++ EG+ I + G L A L + GI+ V N
Sbjct: 362 AIVGTSGTLAYGNPLEIGKGEILAEGKEIAFLGYGDVVQRCL-IARSLLFNFGIQATVAN 420
Query: 257 LRTIRPMDFDTIARSIAKTHHLITVEQGWPQSGIGAEI 294
R +P+D D I + LITVE+G G G+ +
Sbjct: 421 ARFCKPLDIDLIRMLCQQHDFLITVEEG-TVGGFGSHV 457
>10_08_0440 +
17930970-17931297,17931682-17931905,17932439-17932465,
17933747-17934340
Length = 390
Score = 29.9 bits (64), Expect = 3.2
Identities = 15/59 (25%), Positives = 27/59 (45%)
Query: 238 LKAAEQLAGSKGIECEVVNLRTIRPMDFDTIARSIAKTHHLITVEQGWPQSGIGAEICA 296
L ++G+ I E + + + F I RS+ T ++ ++ WP+ G A I A
Sbjct: 238 LTRISNISGTHLINKEYTSKLSTLELTFGYIVRSVEATINVRVIDGSWPEEGFSARITA 296
>11_01_0595 +
4732330-4732723,4732839-4732903,4733023-4733143,
4733596-4733687,4733850-4733915,4734106-4734125,
4734147-4734239,4734358-4734445,4734570-4734635,
4734728-4734843,4735410-4735500,4736133-4736234,
4736342-4736425,4736551-4736643,4736728-4736823,
4736914-4736999,4737528-4737606,4737675-4737788,
4737890-4737985,4738060-4738123,4738221-4738510,
4738901-4738956,4739060-4739177,4739287-4739367,
4739683-4739762,4740001-4740055,4740142-4740211,
4740279-4740468,4740567-4740690,4741055-4741129,
4741217-4741390
Length = 1112
Score = 28.7 bits (61), Expect = 7.4
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 230 AGRGTDTALKAAEQLAGSKGIECEVVNLRTIRPMDFDTIARS 271
AGRGTD L ++ + IE V+ T P D +T+ S
Sbjct: 609 AGRGTDIILGGNPKMLAKEIIEDNVLPFLTHEPPDVETVGES 650
>06_03_1455 +
30264023-30264174,30265930-30266070,30266328-30266430,
30266510-30266659,30267184-30267229,30267383-30267738
Length = 315
Score = 28.7 bits (61), Expect = 7.4
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 125 TVPVPIVFRGPNGAASGVAAQHSQCFGAWYSHCP 158
+V P++F G + A V FGAWYS P
Sbjct: 23 SVLTPLLFAGGDPRAQEVTTSSISRFGAWYSGSP 56
>04_04_0764 -
27889257-27889394,27889472-27890128,27904516-27904572,
27904935-27905032,27905047-27905113
Length = 338
Score = 28.3 bits (60), Expect = 9.7
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 141 GVAAQHSQCFGAWYSHCPGLKVL-MPYSAE-DAKGLLKAAI 179
GVA H+ CF +W P KV+ +P +A +++ LLK A+
Sbjct: 197 GVAYSHASCFVSWKRANPAEKVVAVPMTAGIESQKLLKKAV 237
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.135 0.404
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,229,911
Number of Sequences: 37544
Number of extensions: 378537
Number of successful extensions: 840
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 813
Number of HSP's gapped (non-prelim): 14
length of query: 351
length of database: 14,793,348
effective HSP length: 83
effective length of query: 268
effective length of database: 11,677,196
effective search space: 3129488528
effective search space used: 3129488528
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)
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