GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002750-TA|BGIBMGA002750-PA|IPR005475|Transketolase,
central region, IPR005476|Transketolase, C-terminal,
IPR009014|Transketolase, C-terminal-like
         (351 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038606-5|AAB92024.2|  352|Caenorhabditis elegans Hypothetical ...   457   e-129
Z79695-2|CAB01970.1|  366|Caenorhabditis elegans Hypothetical pr...   176   2e-44
Z81055-1|CAB02889.1|  618|Caenorhabditis elegans Hypothetical pr...    50   2e-06
U70854-16|AAB09151.1|  169|Caenorhabditis elegans Hypothetical p...    30   2.1  
Z81027-2|CAB02687.1|  282|Caenorhabditis elegans Hypothetical pr...    29   6.5  
AL132949-16|CAB61089.1|  535|Caenorhabditis elegans Hypothetical...    28   8.6  
AF040659-4|AAK39394.1|  815|Caenorhabditis elegans Half transpor...    28   8.6  

>AF038606-5|AAB92024.2|  352|Caenorhabditis elegans Hypothetical
           protein C04C3.3 protein.
          Length = 352

 Score =  457 bits (1126), Expect = e-129
 Identities = 211/318 (66%), Positives = 260/318 (81%), Gaps = 1/318 (0%)

Query: 11  ATSKALASKPVTVRDALNQAIDEEMERDEKVFVLGEEVAQYDGAYKVTRGLWKKYGDKRV 70
           A +   A+  +TVRDALNQA+DEE++RD++VF++GEEVAQYDGAYK+++GLWKK+GDKRV
Sbjct: 15  AGTSTRAASTMTVRDALNQAMDEEIKRDDRVFLMGEEVAQYDGAYKISKGLWKKHGDKRV 74

Query: 71  IDTPITEXXXXXXXXXXXXXXLKPICEFMTFNFSMQAIDHIINSAAKTFYMSAGTVPVPI 130
           +DTPITE              L+PICEFMTFNFSMQAID IINSAAKT+YMSAG VPVPI
Sbjct: 75  VDTPITEMGFAGIAVGAAFAGLRPICEFMTFNFSMQAIDQIINSAAKTYYMSAGRVPVPI 134

Query: 131 VFRGPNGAASGVAAQHSQCFGAWYSHCPGLKVLMPYSAEDAKGLLKAAIRDPDPVVMLED 190
           VFRGPNGAA+GVAAQHSQ F AWY+HCPGLKV+ PYSAEDAKGLLKAAIRD +PVV LE+
Sbjct: 135 VFRGPNGAAAGVAAQHSQDFSAWYAHCPGLKVVCPYSAEDAKGLLKAAIRDDNPVVFLEN 194

Query: 191 EIMYGIPFPMSDEAQSKDFVLPIGKAKVEREGRHITLVCAGRGTDTALKAAEQLAGSKGI 250
           EI+YG  FP+ DE  S DFV+PIGKAK+ER G H+T+V   RG + +L+AA+QL  + G+
Sbjct: 195 EILYGQSFPVGDEVLSDDFVVPIGKAKIERAGDHVTIVSYSRGVEFSLEAAKQLE-AIGV 253

Query: 251 ECEVVNLRTIRPMDFDTIARSIAKTHHLITVEQGWPQSGIGAEICARVMESPSFFELDAP 310
             EV+NLR++RP DF++I +S+ KTHHL++VE GWP +GIG+EI A+VMES  F +LDAP
Sbjct: 254 SAEVINLRSLRPFDFESIRQSVHKTHHLVSVETGWPFAGIGSEIAAQVMESDVFDQLDAP 313

Query: 311 VWRVCGADVPMPYARTLE 328
           + RV G DVPMPY +TLE
Sbjct: 314 LLRVTGVDVPMPYTQTLE 331


>Z79695-2|CAB01970.1|  366|Caenorhabditis elegans Hypothetical
           protein F27D4.5 protein.
          Length = 366

 Score =  176 bits (428), Expect = 2e-44
 Identities = 101/309 (32%), Positives = 159/309 (51%), Gaps = 6/309 (1%)

Query: 16  LASKPVTVRDALNQAIDEEMERDEKVFVLGEEVAQYDGAYKVTRGLWKKYGDKRVIDTPI 75
           L    + +  ++N+A+   ME D+   + GE+VA + G ++ +  L KK+G  RV +TP+
Sbjct: 40  LEKTKMNLMQSVNEAMRIAMETDDSAVLFGEDVA-FGGVFRCSLDLQKKFGKDRVFNTPL 98

Query: 76  TEXXXXXXXXXXXXXXLKPICEFMTFNFSMQAIDHIINSAAKTFYMSAGTVPV-PIVFRG 134
            E                 I E    ++   A D ++N AAK  Y S        +  R 
Sbjct: 99  CEQGIAGFGIGVAAAGATAIAEIQFGDYIFPAYDQLVNEAAKFRYRSGNQFDCGKLTVRT 158

Query: 135 PNGAASGVAAQHSQCFGAWYSHCPGLKVLMPYSAEDAKGLLKAAIRDPDPVVMLEDEIMY 194
             GA    A  HSQ   A ++H PGLK+++P     AKGLL + IRDP+P +  E +I+Y
Sbjct: 159 TWGAVGHGALYHSQSPEANFTHTPGLKLVVPRGPVQAKGLLLSCIRDPNPCIFFEPKILY 218

Query: 195 GIPFPMSDEAQSKDFVLPIGKAKVEREGRHITLVCAGRGTDTALKAAEQLAGSKGIECEV 254
            +    S++  + D+ +P+G+A+  R G+ +TLV  G     AL+AA+        + EV
Sbjct: 219 RLA---SEDVPTGDYTIPLGQAETVRSGKDLTLVAWGTQVHVALEAAQLAKEKLNADVEV 275

Query: 255 VNLRTIRPMDFDTIARSIAKTHHLITVEQGWPQSGIGAEICARVMESPSFFELDAPVWRV 314
           ++L+TI+P D D +  S+ KT  LI   +    SG GAEI A  ++   F  L++P+ RV
Sbjct: 276 IDLQTIQPWDEDHVVESVQKTGRLIVTHEAPISSGFGAEI-ASTVQKRCFLNLESPIDRV 334

Query: 315 CGADVPMPY 323
            G D P P+
Sbjct: 335 AGFDTPFPH 343


>Z81055-1|CAB02889.1|  618|Caenorhabditis elegans Hypothetical
           protein F01G10.1 protein.
          Length = 618

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 4/94 (4%)

Query: 213 IGKAKVEREGRHITLVCAGRGTDT--ALKAAEQLAGSKGIECEVVNLRTIRPMDFDTIAR 270
           IG+AKV ++     +V  G G     +LKAAE+L   +GI   V++  TI+P+D  TIA 
Sbjct: 487 IGQAKVVKQSAQDKIVLVGSGVTLYESLKAAEELE-KEGIHATVIDPFTIKPLDGKTIAE 545

Query: 271 SIAKT-HHLITVEQGWPQSGIGAEICARVMESPS 303
              K    ++T E  +   GIG  + A + + P+
Sbjct: 546 HALKVGGRVVTTEDHYAAGGIGEAVSAALADYPT 579


>U70854-16|AAB09151.1|  169|Caenorhabditis elegans Hypothetical
           protein F38A5.7 protein.
          Length = 169

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 16/28 (57%), Positives = 19/28 (67%), Gaps = 3/28 (10%)

Query: 265 FDTIARSIAKTH---HLITVEQGWPQSG 289
           FDTIAR  A T    H ITVEQ +P++G
Sbjct: 67  FDTIARYAAPTDDNVHEITVEQSYPEAG 94


>Z81027-2|CAB02687.1|  282|Caenorhabditis elegans Hypothetical
          protein AH10.3 protein.
          Length = 282

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 14/37 (37%), Positives = 21/37 (56%)

Query: 5  LSRRSFATSKALASKPVTVRDALNQAIDEEMERDEKV 41
          L  R+ ATS    ++P T  D L++   EEM+R E +
Sbjct: 32 LGSRNGATSSKTINEPTTTEDELDEESMEEMKRRELI 68


>AL132949-16|CAB61089.1|  535|Caenorhabditis elegans Hypothetical
           protein Y53F4B.18 protein.
          Length = 535

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 178 AIRDPDPVVM-LEDEIMYGIPFPMSDEAQSKDFVLPIG 214
           A+ D D +   LE++ +YG+PF M D  + ++ ++  G
Sbjct: 110 ALADEDDIKKKLEEKPLYGVPFTMKDALEVENEIITCG 147


>AF040659-4|AAK39394.1|  815|Caenorhabditis elegans Half transporter
           (pgp related)protein 9, isoform a protein.
          Length = 815

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 205 QSKDFVLPIGKAKVEREGRHITLVCAGRGTDTALKAAEQLAGSKGIECEV 254
           ++ D ++ I K KVE+ G H TL+    G    L   + ++G  G++ E+
Sbjct: 724 ENADKIVVINKGKVEQLGNHKTLM-EQEGLYKQLVQRQMMSGEDGLDDEI 772


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.135    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,647,052
Number of Sequences: 27539
Number of extensions: 304092
Number of successful extensions: 619
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 611
Number of HSP's gapped (non-prelim): 7
length of query: 351
length of database: 12,573,161
effective HSP length: 82
effective length of query: 269
effective length of database: 10,314,963
effective search space: 2774725047
effective search space used: 2774725047
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)