GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002750-TA|BGIBMGA002750-PA|IPR005475|Transketolase,
central region, IPR005476|Transketolase, C-terminal,
IPR009014|Transketolase, C-terminal-like
         (351 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.7  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   3.0  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   9.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   9.2  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 7/92 (7%)

Query: 218 VEREGRHITLVCAGRGTDTALKAAEQLAGSKGIECEVVNLRT-IRPMDFDTIARSIAKT- 275
           VER  +H+ L C  +G  T     ++  GSK  E E +  R   + +   T+     K  
Sbjct: 721 VERN-KHVALHCQAQGVPTPTIVWKKATGSKSGEYEELRERAYTKILSNGTLLLQHVKED 779

Query: 276 ---HHLITVEQGWPQSGIGAEICARVMESPSF 304
               +L     G   SGIG  +  +V  SP F
Sbjct: 780 REGFYLCQASNG-IGSGIGKVVQLKVNSSPYF 810


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 7/92 (7%)

Query: 218 VEREGRHITLVCAGRGTDTALKAAEQLAGSKGIECEVVNLRT-IRPMDFDTIARSIAKT- 275
           VER  +H+ L C  +G  T     ++  GSK  E E +  R   + +   T+     K  
Sbjct: 717 VERN-KHVALHCQAQGVPTPTIVWKKATGSKSGEYEELRERAYTKILSNGTLLLQHVKED 775

Query: 276 ---HHLITVEQGWPQSGIGAEICARVMESPSF 304
               +L     G   SGIG  +  +V  SP F
Sbjct: 776 REGFYLCQASNG-IGSGIGKVVQLKVNSSPYF 806


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 7/24 (29%), Positives = 17/24 (70%)

Query: 209 FVLPIGKAKVEREGRHITLVCAGR 232
           +V+  GK +V R+G++++ +  G+
Sbjct: 140 YVMEEGKVEVSRDGKYLSTLAPGK 163


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 9/13 (69%), Positives = 12/13 (92%)

Query: 168 AEDAKGLLKAAIR 180
           AEDA+G+L+AA R
Sbjct: 206 AEDARGILEAARR 218


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 9/13 (69%), Positives = 12/13 (92%)

Query: 168 AEDAKGLLKAAIR 180
           AEDA+G+L+AA R
Sbjct: 296 AEDARGILEAARR 308


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.135    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,622
Number of Sequences: 429
Number of extensions: 3088
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 5
length of query: 351
length of database: 140,377
effective HSP length: 58
effective length of query: 293
effective length of database: 115,495
effective search space: 33840035
effective search space used: 33840035
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)